Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1006 and Dshi_1007 are separated by 276 nucleotides Dshi_1007 and Dshi_1008 are separated by 11 nucleotides Dshi_1008 and Dshi_1009 are separated by 24 nucleotides
Dshi_1006: Dshi_1006 - major facilitator superfamily MFS_1 (RefSeq), at 1,039,975 to 1,041,198
_1006
Dshi_1007: Dshi_1007 - 3-oxoadipate enol-lactonase (RefSeq), at 1,041,475 to 1,042,281
_1007
Dshi_1008: Dshi_1008 - enoyl-(acyl-carrier-protein) reductase (RefSeq), at 1,042,293 to 1,043,081
_1008
Dshi_1009: Dshi_1009 - Beta-ketoacyl synthase (RefSeq), at 1,043,106 to 1,044,335
_1009
Position (kb)
1041
1042
1043 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1040.573 kb on + strand, within Dshi_1006 at 1040.661 kb on + strand, within Dshi_1006 at 1040.679 kb on - strand, within Dshi_1006 at 1040.679 kb on - strand, within Dshi_1006 at 1040.687 kb on + strand, within Dshi_1006 at 1040.687 kb on + strand, within Dshi_1006 at 1040.724 kb on - strand, within Dshi_1006 at 1041.034 kb on + strand, within Dshi_1006 at 1041.379 kb on + strand at 1041.403 kb on - strand at 1041.404 kb on - strand at 1041.474 kb on - strand at 1041.536 kb on + strand at 1041.536 kb on + strand at 1041.560 kb on - strand, within Dshi_1007 at 1041.560 kb on - strand, within Dshi_1007 at 1042.142 kb on + strand, within Dshi_1007
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,040,573 + Dshi_1006 0.49 +1.2 1,040,661 + Dshi_1006 0.56 +1.0 1,040,679 - Dshi_1006 0.58 +0.3 1,040,679 - Dshi_1006 0.58 -1.5 1,040,687 + Dshi_1006 0.58 -0.6 1,040,687 + Dshi_1006 0.58 +0.7 1,040,724 - Dshi_1006 0.61 -4.2 1,041,034 + Dshi_1006 0.87 +0.1 1,041,379 + -2.0 1,041,403 - +1.0 1,041,404 - +2.0 1,041,474 - +0.6 1,041,536 + -3.1 1,041,536 + -0.7 1,041,560 - Dshi_1007 0.11 -0.3 1,041,560 - Dshi_1007 0.11 -0.6 1,042,142 + Dshi_1007 0.83 -1.9
Or see this region's nucleotide sequence