Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0959 and Dshi_0960 are separated by 202 nucleotides Dshi_0960 and Dshi_0961 are separated by 115 nucleotides
Dshi_0959: Dshi_0959 - transcriptional regulator, RpiR family (RefSeq), at 983,690 to 984,535
_0959
Dshi_0960: Dshi_0960 - transcriptional regulator, GntR family (RefSeq), at 984,738 to 985,418
_0960
Dshi_0961: Dshi_0961 - Catechol dioxygenase domain protein (RefSeq), at 985,534 to 986,037
_0961
Position (kb) 984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 983.813 kb on - strand, within Dshi_0959 at 983.831 kb on + strand, within Dshi_0959 at 983.831 kb on + strand, within Dshi_0959 at 984.038 kb on + strand, within Dshi_0959 at 984.064 kb on + strand, within Dshi_0959 at 984.098 kb on + strand, within Dshi_0959 at 984.189 kb on + strand, within Dshi_0959 at 984.243 kb on + strand, within Dshi_0959 at 984.256 kb on - strand, within Dshi_0959 at 984.288 kb on - strand, within Dshi_0959 at 984.522 kb on - strand at 984.722 kb on + strand at 984.730 kb on - strand at 984.856 kb on - strand, within Dshi_0960 at 984.931 kb on + strand, within Dshi_0960 at 984.939 kb on - strand, within Dshi_0960 at 984.972 kb on - strand, within Dshi_0960 at 985.038 kb on + strand, within Dshi_0960 at 985.065 kb on - strand, within Dshi_0960 at 985.072 kb on - strand, within Dshi_0960 at 985.172 kb on - strand, within Dshi_0960 at 985.292 kb on + strand, within Dshi_0960 at 985.334 kb on - strand, within Dshi_0960 at 985.389 kb on + strand at 985.460 kb on - strand at 985.497 kb on - strand at 985.502 kb on + strand at 985.522 kb on + strand at 985.619 kb on + strand, within Dshi_0961 at 985.676 kb on + strand, within Dshi_0961 at 985.676 kb on + strand, within Dshi_0961 at 985.678 kb on + strand, within Dshi_0961 at 985.693 kb on - strand, within Dshi_0961 at 985.780 kb on - strand, within Dshi_0961 at 985.790 kb on + strand, within Dshi_0961 at 985.836 kb on + strand, within Dshi_0961 at 985.880 kb on + strand, within Dshi_0961 at 985.939 kb on + strand, within Dshi_0961 at 985.948 kb on + strand, within Dshi_0961 at 985.957 kb on - strand, within Dshi_0961 at 986.074 kb on - strand at 986.271 kb on + strand at 986.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 983,813 - Dshi_0959 0.15 -2.0 983,831 + Dshi_0959 0.17 +3.3 983,831 + Dshi_0959 0.17 -3.0 984,038 + Dshi_0959 0.41 +2.3 984,064 + Dshi_0959 0.44 -1.1 984,098 + Dshi_0959 0.48 -1.2 984,189 + Dshi_0959 0.59 -0.8 984,243 + Dshi_0959 0.65 -0.4 984,256 - Dshi_0959 0.67 +2.0 984,288 - Dshi_0959 0.71 -0.6 984,522 - +1.9 984,722 + -0.5 984,730 - -1.4 984,856 - Dshi_0960 0.17 +0.9 984,931 + Dshi_0960 0.28 -2.3 984,939 - Dshi_0960 0.30 -2.5 984,972 - Dshi_0960 0.34 +0.0 985,038 + Dshi_0960 0.44 +2.1 985,065 - Dshi_0960 0.48 -0.6 985,072 - Dshi_0960 0.49 +1.1 985,172 - Dshi_0960 0.64 +0.5 985,292 + Dshi_0960 0.81 -0.6 985,334 - Dshi_0960 0.88 -0.4 985,389 + +1.3 985,460 - -2.9 985,497 - -0.7 985,502 + +0.5 985,522 + +1.4 985,619 + Dshi_0961 0.17 -0.8 985,676 + Dshi_0961 0.28 +3.0 985,676 + Dshi_0961 0.28 +1.0 985,678 + Dshi_0961 0.29 -1.3 985,693 - Dshi_0961 0.32 +0.2 985,780 - Dshi_0961 0.49 +0.7 985,790 + Dshi_0961 0.51 -2.5 985,836 + Dshi_0961 0.60 +1.0 985,880 + Dshi_0961 0.69 -1.4 985,939 + Dshi_0961 0.80 -0.7 985,948 + Dshi_0961 0.82 +1.0 985,957 - Dshi_0961 0.84 -2.3 986,074 - -1.6 986,271 + +0.6 986,279 - +0.3
Or see this region's nucleotide sequence