Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0953 and Dshi_0954 are separated by 250 nucleotides Dshi_0954 and Dshi_0955 are separated by 36 nucleotides Dshi_0955 and Dshi_0956 overlap by 1 nucleotides
Dshi_0953: Dshi_0953 - MATE efflux family protein (RefSeq), at 977,230 to 978,582
_0953
Dshi_0954: Dshi_0954 - GTP-binding protein YchF (RefSeq), at 978,833 to 979,930
_0954
Dshi_0955: Dshi_0955 - hydantoin racemase (RefSeq), at 979,967 to 980,662
_0955
Dshi_0956: Dshi_0956 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 980,662 to 981,948
_0956
Position (kb) 978
979
980 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 977.955 kb on + strand, within Dshi_0953 at 977.994 kb on - strand, within Dshi_0953 at 978.006 kb on + strand, within Dshi_0953 at 978.020 kb on + strand, within Dshi_0953 at 978.057 kb on - strand, within Dshi_0953 at 978.080 kb on + strand, within Dshi_0953 at 978.259 kb on + strand, within Dshi_0953 at 978.329 kb on + strand, within Dshi_0953 at 978.337 kb on - strand, within Dshi_0953 at 978.337 kb on - strand, within Dshi_0953 at 978.349 kb on + strand, within Dshi_0953 at 978.378 kb on - strand, within Dshi_0953 at 978.437 kb on + strand, within Dshi_0953 at 978.437 kb on + strand, within Dshi_0953 at 978.556 kb on + strand at 978.584 kb on + strand at 978.595 kb on - strand at 978.645 kb on + strand at 978.652 kb on - strand at 978.729 kb on - strand at 978.756 kb on + strand at 978.756 kb on + strand at 978.756 kb on + strand at 978.764 kb on - strand at 979.160 kb on - strand, within Dshi_0954 at 979.930 kb on + strand at 980.187 kb on - strand, within Dshi_0955 at 980.298 kb on + strand, within Dshi_0955 at 980.301 kb on - strand, within Dshi_0955 at 980.301 kb on - strand, within Dshi_0955 at 980.419 kb on - strand, within Dshi_0955 at 980.475 kb on - strand, within Dshi_0955 at 980.553 kb on + strand, within Dshi_0955 at 980.553 kb on + strand, within Dshi_0955 at 980.587 kb on - strand, within Dshi_0955 at 980.721 kb on + strand at 980.754 kb on - strand at 980.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 977,955 + Dshi_0953 0.54 -0.6 977,994 - Dshi_0953 0.56 -1.3 978,006 + Dshi_0953 0.57 -1.0 978,020 + Dshi_0953 0.58 +1.4 978,057 - Dshi_0953 0.61 +0.0 978,080 + Dshi_0953 0.63 -3.4 978,259 + Dshi_0953 0.76 -3.4 978,329 + Dshi_0953 0.81 -1.0 978,337 - Dshi_0953 0.82 -1.8 978,337 - Dshi_0953 0.82 -0.3 978,349 + Dshi_0953 0.83 +1.0 978,378 - Dshi_0953 0.85 -0.1 978,437 + Dshi_0953 0.89 +0.0 978,437 + Dshi_0953 0.89 +1.4 978,556 + -1.3 978,584 + -3.1 978,595 - +1.0 978,645 + -0.4 978,652 - -3.1 978,729 - -0.2 978,756 + +1.0 978,756 + +0.4 978,756 + -2.4 978,764 - -2.7 979,160 - Dshi_0954 0.30 -3.2 979,930 + -1.3 980,187 - Dshi_0955 0.32 -0.4 980,298 + Dshi_0955 0.48 -1.8 980,301 - Dshi_0955 0.48 +1.3 980,301 - Dshi_0955 0.48 +1.0 980,419 - Dshi_0955 0.65 +0.6 980,475 - Dshi_0955 0.73 -0.6 980,553 + Dshi_0955 0.84 +1.3 980,553 + Dshi_0955 0.84 -1.6 980,587 - Dshi_0955 0.89 -0.9 980,721 + +1.6 980,754 - +2.0 980,790 + -1.0
Or see this region's nucleotide sequence