Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0945 and Dshi_0946 are separated by 283 nucleotides Dshi_0946 and Dshi_0947 are separated by 57 nucleotides Dshi_0947 and Dshi_0948 are separated by 129 nucleotides
Dshi_0945: Dshi_0945 - Peptidoglycan-binding domain 1 protein (RefSeq), at 970,257 to 971,039
_0945
Dshi_0946: Dshi_0946 - hypothetical protein (RefSeq), at 971,323 to 971,721
_0946
Dshi_0947: Dshi_0947 - Aminoacyl-tRNA hydrolase (RefSeq), at 971,779 to 972,486
_0947
Dshi_0948: Dshi_0948 - L-lactate dehydrogenase (cytochrome) (RefSeq), at 972,616 to 973,788
_0948
Position (kb) 971
972 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 970.356 kb on + strand, within Dshi_0945 at 970.358 kb on + strand, within Dshi_0945 at 970.454 kb on + strand, within Dshi_0945 at 970.466 kb on + strand, within Dshi_0945 at 970.474 kb on - strand, within Dshi_0945 at 970.485 kb on - strand, within Dshi_0945 at 970.493 kb on - strand, within Dshi_0945 at 970.496 kb on + strand, within Dshi_0945 at 970.585 kb on - strand, within Dshi_0945 at 970.661 kb on + strand, within Dshi_0945 at 970.670 kb on - strand, within Dshi_0945 at 970.749 kb on + strand, within Dshi_0945 at 970.759 kb on + strand, within Dshi_0945 at 970.766 kb on - strand, within Dshi_0945 at 970.767 kb on - strand, within Dshi_0945 at 970.796 kb on + strand, within Dshi_0945 at 970.847 kb on + strand, within Dshi_0945 at 970.886 kb on + strand, within Dshi_0945 at 970.886 kb on + strand, within Dshi_0945 at 970.913 kb on + strand, within Dshi_0945 at 970.919 kb on - strand, within Dshi_0945 at 970.921 kb on - strand, within Dshi_0945 at 970.921 kb on - strand, within Dshi_0945 at 970.926 kb on - strand, within Dshi_0945 at 970.968 kb on + strand at 970.968 kb on + strand at 970.968 kb on + strand at 970.968 kb on + strand at 970.968 kb on + strand at 970.968 kb on + strand at 970.973 kb on + strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.981 kb on - strand at 970.987 kb on - strand at 970.987 kb on - strand at 970.987 kb on - strand at 970.994 kb on + strand at 970.994 kb on + strand at 971.002 kb on - strand at 971.002 kb on - strand at 971.002 kb on - strand at 971.003 kb on - strand at 971.004 kb on - strand at 971.009 kb on - strand at 971.024 kb on - strand at 971.024 kb on - strand at 971.028 kb on + strand at 971.042 kb on - strand at 971.111 kb on + strand at 971.111 kb on + strand at 971.111 kb on + strand at 971.115 kb on + strand at 971.115 kb on + strand at 971.115 kb on + strand at 971.115 kb on + strand at 971.119 kb on - strand at 971.119 kb on - strand at 971.119 kb on - strand at 971.119 kb on - strand at 971.119 kb on - strand at 971.123 kb on - strand at 971.123 kb on - strand at 971.124 kb on - strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.133 kb on - strand at 971.133 kb on - strand at 971.138 kb on + strand at 971.142 kb on + strand at 971.145 kb on - strand at 971.152 kb on + strand at 971.161 kb on + strand at 971.167 kb on + strand at 971.193 kb on + strand at 971.210 kb on - strand at 971.210 kb on - strand at 971.210 kb on - strand at 971.210 kb on - strand at 971.210 kb on - strand at 971.258 kb on + strand at 971.329 kb on + strand at 971.349 kb on + strand at 971.351 kb on + strand at 971.359 kb on - strand at 971.361 kb on + strand at 971.361 kb on + strand at 971.369 kb on - strand, within Dshi_0946 at 971.369 kb on - strand, within Dshi_0946 at 971.369 kb on - strand, within Dshi_0946 at 971.427 kb on - strand, within Dshi_0946 at 971.434 kb on + strand, within Dshi_0946 at 971.437 kb on - strand, within Dshi_0946 at 971.441 kb on + strand, within Dshi_0946 at 971.447 kb on - strand, within Dshi_0946 at 971.450 kb on + strand, within Dshi_0946 at 971.451 kb on + strand, within Dshi_0946 at 971.451 kb on + strand, within Dshi_0946 at 971.455 kb on + strand, within Dshi_0946 at 971.458 kb on - strand, within Dshi_0946 at 971.459 kb on - strand, within Dshi_0946 at 971.462 kb on + strand, within Dshi_0946 at 971.472 kb on + strand, within Dshi_0946 at 971.476 kb on + strand, within Dshi_0946 at 971.483 kb on + strand, within Dshi_0946 at 971.484 kb on - strand, within Dshi_0946 at 971.484 kb on - strand, within Dshi_0946 at 971.491 kb on - strand, within Dshi_0946 at 971.514 kb on - strand, within Dshi_0946 at 971.531 kb on - strand, within Dshi_0946 at 971.575 kb on + strand, within Dshi_0946 at 971.577 kb on + strand, within Dshi_0946 at 971.577 kb on + strand, within Dshi_0946 at 971.577 kb on + strand, within Dshi_0946 at 971.581 kb on - strand, within Dshi_0946 at 971.587 kb on + strand, within Dshi_0946 at 971.589 kb on + strand, within Dshi_0946 at 971.589 kb on + strand, within Dshi_0946 at 971.589 kb on + strand, within Dshi_0946 at 971.589 kb on + strand, within Dshi_0946 at 971.594 kb on + strand, within Dshi_0946 at 971.594 kb on + strand, within Dshi_0946 at 971.597 kb on - strand, within Dshi_0946 at 971.597 kb on - strand, within Dshi_0946 at 971.597 kb on - strand, within Dshi_0946 at 971.597 kb on - strand, within Dshi_0946 at 971.597 kb on - strand, within Dshi_0946 at 971.599 kb on + strand, within Dshi_0946 at 971.600 kb on + strand, within Dshi_0946 at 971.600 kb on + strand, within Dshi_0946 at 971.608 kb on - strand, within Dshi_0946 at 971.608 kb on - strand, within Dshi_0946 at 971.609 kb on - strand, within Dshi_0946 at 971.658 kb on + strand, within Dshi_0946 at 971.663 kb on + strand, within Dshi_0946 at 971.668 kb on + strand, within Dshi_0946 at 971.668 kb on + strand, within Dshi_0946 at 971.668 kb on + strand, within Dshi_0946 at 971.668 kb on + strand, within Dshi_0946 at 971.668 kb on + strand, within Dshi_0946 at 971.671 kb on - strand, within Dshi_0946 at 971.673 kb on + strand, within Dshi_0946 at 971.691 kb on - strand at 971.738 kb on - strand at 971.770 kb on + strand at 971.778 kb on - strand at 971.788 kb on - strand at 971.903 kb on - strand, within Dshi_0947
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 970,356 + Dshi_0945 0.13 +1.3 970,358 + Dshi_0945 0.13 -1.0 970,454 + Dshi_0945 0.25 +0.1 970,466 + Dshi_0945 0.27 +0.6 970,474 - Dshi_0945 0.28 +1.0 970,485 - Dshi_0945 0.29 +0.0 970,493 - Dshi_0945 0.30 +1.0 970,496 + Dshi_0945 0.31 +0.3 970,585 - Dshi_0945 0.42 +0.4 970,661 + Dshi_0945 0.52 -3.5 970,670 - Dshi_0945 0.53 +1.0 970,749 + Dshi_0945 0.63 +3.0 970,759 + Dshi_0945 0.64 -0.1 970,766 - Dshi_0945 0.65 -0.6 970,767 - Dshi_0945 0.65 -1.6 970,796 + Dshi_0945 0.69 -1.8 970,847 + Dshi_0945 0.75 +0.5 970,886 + Dshi_0945 0.80 +0.5 970,886 + Dshi_0945 0.80 -3.0 970,913 + Dshi_0945 0.84 +1.5 970,919 - Dshi_0945 0.85 +0.3 970,921 - Dshi_0945 0.85 -2.0 970,921 - Dshi_0945 0.85 -0.3 970,926 - Dshi_0945 0.85 +1.0 970,968 + -2.4 970,968 + -2.0 970,968 + -2.3 970,968 + +4.2 970,968 + +2.0 970,968 + +1.0 970,973 + +1.0 970,976 - +1.7 970,976 - +4.3 970,976 - +1.0 970,976 - +0.3 970,976 - +1.0 970,976 - -1.8 970,976 - +1.0 970,976 - -0.2 970,976 - -1.8 970,976 - -0.7 970,976 - -2.7 970,981 - +1.0 970,987 - +3.3 970,987 - -0.4 970,987 - -1.1 970,994 + -0.8 970,994 + +0.2 971,002 - +1.2 971,002 - -1.0 971,002 - -0.3 971,003 - -2.0 971,004 - -2.0 971,009 - -0.6 971,024 - +1.0 971,024 - -0.9 971,028 + -0.4 971,042 - -0.6 971,111 + -1.8 971,111 + +1.0 971,111 + +0.6 971,115 + +0.0 971,115 + +1.0 971,115 + -2.8 971,115 + +1.0 971,119 - -2.3 971,119 - -1.7 971,119 - -1.1 971,119 - -0.8 971,119 - -2.8 971,123 - +1.6 971,123 - -0.6 971,124 - -0.5 971,125 + -1.3 971,125 + +1.0 971,125 + -1.3 971,125 + -1.3 971,125 + +1.0 971,125 + -1.8 971,125 + +0.7 971,125 + -1.3 971,133 - -0.1 971,133 - -1.0 971,138 + +0.0 971,142 + +0.0 971,145 - -1.6 971,152 + -0.8 971,161 + +2.6 971,167 + -1.6 971,193 + +1.4 971,210 - +1.0 971,210 - +0.6 971,210 - +4.0 971,210 - +0.8 971,210 - -0.6 971,258 + +0.0 971,329 + -0.5 971,349 + +0.0 971,351 + +1.0 971,359 - -0.6 971,361 + +1.0 971,361 + -2.8 971,369 - Dshi_0946 0.12 -2.4 971,369 - Dshi_0946 0.12 -0.3 971,369 - Dshi_0946 0.12 +2.0 971,427 - Dshi_0946 0.26 +0.0 971,434 + Dshi_0946 0.28 +1.2 971,437 - Dshi_0946 0.29 +1.0 971,441 + Dshi_0946 0.30 +1.4 971,447 - Dshi_0946 0.31 -1.0 971,450 + Dshi_0946 0.32 -2.8 971,451 + Dshi_0946 0.32 -1.3 971,451 + Dshi_0946 0.32 +1.0 971,455 + Dshi_0946 0.33 +1.0 971,458 - Dshi_0946 0.34 +3.6 971,459 - Dshi_0946 0.34 -2.0 971,462 + Dshi_0946 0.35 +1.9 971,472 + Dshi_0946 0.37 +1.0 971,476 + Dshi_0946 0.38 +1.2 971,483 + Dshi_0946 0.40 +1.4 971,484 - Dshi_0946 0.40 -3.7 971,484 - Dshi_0946 0.40 -1.6 971,491 - Dshi_0946 0.42 +0.0 971,514 - Dshi_0946 0.48 +1.0 971,531 - Dshi_0946 0.52 -1.2 971,575 + Dshi_0946 0.63 -1.3 971,577 + Dshi_0946 0.64 -0.6 971,577 + Dshi_0946 0.64 +0.4 971,577 + Dshi_0946 0.64 +1.0 971,581 - Dshi_0946 0.65 -1.6 971,587 + Dshi_0946 0.66 -2.5 971,589 + Dshi_0946 0.67 -0.6 971,589 + Dshi_0946 0.67 +2.6 971,589 + Dshi_0946 0.67 +1.0 971,589 + Dshi_0946 0.67 -2.4 971,594 + Dshi_0946 0.68 +0.0 971,594 + Dshi_0946 0.68 -1.8 971,597 - Dshi_0946 0.69 -0.1 971,597 - Dshi_0946 0.69 +0.0 971,597 - Dshi_0946 0.69 -1.8 971,597 - Dshi_0946 0.69 +1.0 971,597 - Dshi_0946 0.69 -0.1 971,599 + Dshi_0946 0.69 -1.4 971,600 + Dshi_0946 0.69 +1.0 971,600 + Dshi_0946 0.69 +0.0 971,608 - Dshi_0946 0.71 +3.4 971,608 - Dshi_0946 0.71 +1.0 971,609 - Dshi_0946 0.72 -0.7 971,658 + Dshi_0946 0.84 -1.8 971,663 + Dshi_0946 0.85 +3.8 971,668 + Dshi_0946 0.86 +2.9 971,668 + Dshi_0946 0.86 +0.5 971,668 + Dshi_0946 0.86 +0.0 971,668 + Dshi_0946 0.86 -0.8 971,668 + Dshi_0946 0.86 -1.6 971,671 - Dshi_0946 0.87 -4.4 971,673 + Dshi_0946 0.88 -1.7 971,691 - -2.0 971,738 - +2.0 971,770 + -1.8 971,778 - -1.0 971,788 - +1.0 971,903 - Dshi_0947 0.18 -1.1
Or see this region's nucleotide sequence