Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0839 and Dshi_0840 are separated by 29 nucleotides Dshi_0840 and Dshi_0841 are separated by 445 nucleotides
Dshi_0839: Dshi_0839 - acyl-CoA dehydrogenase domain protein (RefSeq), at 849,631 to 851,409
_0839
Dshi_0840: Dshi_0840 - transcriptional regulator, MerR family (RefSeq), at 851,439 to 851,840
_0840
Dshi_0841: Dshi_0841 - hypothetical protein (RefSeq), at 852,286 to 853,314
_0841
Position (kb) 851
852 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 850.558 kb on + strand, within Dshi_0839 at 850.766 kb on + strand, within Dshi_0839 at 850.779 kb on - strand, within Dshi_0839 at 850.790 kb on - strand, within Dshi_0839 at 850.803 kb on + strand, within Dshi_0839 at 850.869 kb on + strand, within Dshi_0839 at 850.877 kb on - strand, within Dshi_0839 at 850.882 kb on - strand, within Dshi_0839 at 850.893 kb on - strand, within Dshi_0839 at 850.914 kb on - strand, within Dshi_0839 at 850.973 kb on + strand, within Dshi_0839 at 851.076 kb on - strand, within Dshi_0839 at 851.134 kb on - strand, within Dshi_0839 at 851.184 kb on + strand, within Dshi_0839 at 851.192 kb on - strand, within Dshi_0839 at 851.250 kb on - strand at 851.250 kb on - strand at 851.302 kb on - strand at 851.396 kb on + strand at 851.495 kb on - strand, within Dshi_0840 at 851.645 kb on + strand, within Dshi_0840 at 851.691 kb on - strand, within Dshi_0840 at 851.692 kb on - strand, within Dshi_0840 at 851.712 kb on - strand, within Dshi_0840 at 851.752 kb on + strand, within Dshi_0840 at 851.760 kb on - strand, within Dshi_0840 at 851.783 kb on + strand, within Dshi_0840 at 851.783 kb on + strand, within Dshi_0840 at 851.783 kb on + strand, within Dshi_0840 at 851.793 kb on - strand, within Dshi_0840 at 851.831 kb on - strand at 851.833 kb on - strand at 851.865 kb on - strand at 851.958 kb on + strand at 851.992 kb on + strand at 852.012 kb on + strand at 852.012 kb on + strand at 852.058 kb on - strand at 852.059 kb on + strand at 852.081 kb on - strand at 852.113 kb on - strand at 852.114 kb on - strand at 852.118 kb on + strand at 852.118 kb on + strand at 852.118 kb on + strand at 852.118 kb on + strand at 852.126 kb on - strand at 852.126 kb on - strand at 852.141 kb on + strand at 852.189 kb on - strand at 852.236 kb on + strand at 852.249 kb on - strand at 852.257 kb on - strand at 852.309 kb on + strand at 852.317 kb on + strand at 852.317 kb on - strand at 852.317 kb on - strand at 852.317 kb on - strand at 852.317 kb on - strand at 852.376 kb on - strand at 852.416 kb on + strand, within Dshi_0841 at 852.478 kb on - strand, within Dshi_0841 at 852.501 kb on + strand, within Dshi_0841 at 852.509 kb on - strand, within Dshi_0841 at 852.526 kb on + strand, within Dshi_0841 at 852.637 kb on + strand, within Dshi_0841 at 852.690 kb on - strand, within Dshi_0841 at 852.694 kb on - strand, within Dshi_0841
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 850,558 + Dshi_0839 0.52 +0.1 850,766 + Dshi_0839 0.64 -0.1 850,779 - Dshi_0839 0.65 -2.9 850,790 - Dshi_0839 0.65 +1.1 850,803 + Dshi_0839 0.66 -1.4 850,869 + Dshi_0839 0.70 +1.8 850,877 - Dshi_0839 0.70 -0.4 850,882 - Dshi_0839 0.70 +3.1 850,893 - Dshi_0839 0.71 -0.7 850,914 - Dshi_0839 0.72 -2.0 850,973 + Dshi_0839 0.75 -0.9 851,076 - Dshi_0839 0.81 +0.4 851,134 - Dshi_0839 0.84 -1.3 851,184 + Dshi_0839 0.87 -3.0 851,192 - Dshi_0839 0.88 -4.5 851,250 - -3.5 851,250 - +0.3 851,302 - +0.6 851,396 + -0.9 851,495 - Dshi_0840 0.14 -0.1 851,645 + Dshi_0840 0.51 -0.8 851,691 - Dshi_0840 0.63 +3.1 851,692 - Dshi_0840 0.63 -2.6 851,712 - Dshi_0840 0.68 -2.7 851,752 + Dshi_0840 0.78 +1.9 851,760 - Dshi_0840 0.80 -0.9 851,783 + Dshi_0840 0.86 -3.7 851,783 + Dshi_0840 0.86 +1.1 851,783 + Dshi_0840 0.86 +1.1 851,793 - Dshi_0840 0.88 +1.1 851,831 - -1.0 851,833 - -0.7 851,865 - -0.5 851,958 + -2.3 851,992 + -1.5 852,012 + -1.5 852,012 + -1.2 852,058 - -0.6 852,059 + -2.9 852,081 - +1.4 852,113 - +2.9 852,114 - -1.5 852,118 + -1.7 852,118 + +2.3 852,118 + -1.9 852,118 + -2.5 852,126 - +2.7 852,126 - +0.0 852,141 + +0.1 852,189 - +1.0 852,236 + -3.3 852,249 - -0.9 852,257 - -0.6 852,309 + +1.1 852,317 + +0.1 852,317 - +1.4 852,317 - +1.5 852,317 - +3.7 852,317 - -1.5 852,376 - -1.5 852,416 + Dshi_0841 0.13 +2.1 852,478 - Dshi_0841 0.19 -1.5 852,501 + Dshi_0841 0.21 +1.7 852,509 - Dshi_0841 0.22 -1.2 852,526 + Dshi_0841 0.23 +1.1 852,637 + Dshi_0841 0.34 +0.2 852,690 - Dshi_0841 0.39 +1.1 852,694 - Dshi_0841 0.40 +3.4
Or see this region's nucleotide sequence