Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0805 and Dshi_0806 are separated by 7 nucleotides Dshi_0806 and Dshi_0807 are separated by 6 nucleotides
Dshi_0805: Dshi_0805 - thiamine pyrophosphate protein central region (RefSeq), at 812,303 to 814,081
_0805
Dshi_0806: Dshi_0806 - hypothetical protein (RefSeq), at 814,089 to 815,120
_0806
Dshi_0807: Dshi_0807 - hypothetical protein (RefSeq), at 815,127 to 816,155
_0807
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 814.074 kb on - strand at 814.139 kb on + strand at 814.208 kb on + strand, within Dshi_0806 at 814.218 kb on + strand, within Dshi_0806 at 814.237 kb on - strand, within Dshi_0806 at 814.241 kb on + strand, within Dshi_0806 at 814.317 kb on + strand, within Dshi_0806 at 814.396 kb on + strand, within Dshi_0806 at 814.582 kb on - strand, within Dshi_0806 at 814.612 kb on + strand, within Dshi_0806 at 814.622 kb on - strand, within Dshi_0806 at 814.630 kb on - strand, within Dshi_0806 at 814.709 kb on + strand, within Dshi_0806 at 814.917 kb on + strand, within Dshi_0806 at 814.920 kb on - strand, within Dshi_0806 at 814.981 kb on - strand, within Dshi_0806 at 815.027 kb on + strand at 815.151 kb on - strand at 815.194 kb on + strand at 815.306 kb on - strand, within Dshi_0807 at 815.333 kb on + strand, within Dshi_0807 at 815.388 kb on + strand, within Dshi_0807 at 815.634 kb on - strand, within Dshi_0807 at 815.710 kb on + strand, within Dshi_0807 at 815.938 kb on - strand, within Dshi_0807 at 816.034 kb on - strand, within Dshi_0807 at 816.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 814,074 - -0.2 814,139 + -2.3 814,208 + Dshi_0806 0.12 +0.8 814,218 + Dshi_0806 0.12 +2.2 814,237 - Dshi_0806 0.14 +0.2 814,241 + Dshi_0806 0.15 -1.7 814,317 + Dshi_0806 0.22 +2.2 814,396 + Dshi_0806 0.30 +1.2 814,582 - Dshi_0806 0.48 +0.6 814,612 + Dshi_0806 0.51 -3.4 814,622 - Dshi_0806 0.52 +1.0 814,630 - Dshi_0806 0.52 +0.1 814,709 + Dshi_0806 0.60 +1.2 814,917 + Dshi_0806 0.80 +1.0 814,920 - Dshi_0806 0.81 +0.7 814,981 - Dshi_0806 0.86 +0.5 815,027 + +1.2 815,151 - -2.3 815,194 + +2.8 815,306 - Dshi_0807 0.17 -1.1 815,333 + Dshi_0807 0.20 -3.4 815,388 + Dshi_0807 0.25 -1.3 815,634 - Dshi_0807 0.49 +1.6 815,710 + Dshi_0807 0.57 -2.7 815,938 - Dshi_0807 0.79 +1.2 816,034 - Dshi_0807 0.88 +1.2 816,119 - +1.2
Or see this region's nucleotide sequence