Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0801 and Dshi_0802 overlap by 4 nucleotides Dshi_0802 and Dshi_0803 are separated by 50 nucleotides Dshi_0803 and Dshi_0804 are separated by 109 nucleotides
Dshi_0801: Dshi_0801 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 807,171 to 808,529
_0801
Dshi_0802: Dshi_0802 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 808,526 to 809,254
_0802
Dshi_0803: Dshi_0803 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 809,305 to 810,537
_0803
Dshi_0804: Dshi_0804 - glucose-methanol-choline oxidoreductase (RefSeq), at 810,647 to 812,269
_0804
Position (kb) 809
810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 808.401 kb on - strand at 808.544 kb on + strand at 808.544 kb on + strand at 808.631 kb on - strand, within Dshi_0802 at 808.672 kb on - strand, within Dshi_0802 at 808.727 kb on - strand, within Dshi_0802 at 808.727 kb on - strand, within Dshi_0802 at 808.734 kb on + strand, within Dshi_0802 at 808.734 kb on + strand, within Dshi_0802 at 808.828 kb on + strand, within Dshi_0802 at 808.838 kb on + strand, within Dshi_0802 at 808.838 kb on + strand, within Dshi_0802 at 808.862 kb on + strand, within Dshi_0802 at 808.880 kb on - strand, within Dshi_0802 at 809.008 kb on - strand, within Dshi_0802 at 809.010 kb on - strand, within Dshi_0802 at 809.116 kb on + strand, within Dshi_0802 at 809.179 kb on + strand, within Dshi_0802 at 809.182 kb on - strand at 809.233 kb on + strand at 809.271 kb on - strand at 809.271 kb on - strand at 809.378 kb on - strand at 809.573 kb on + strand, within Dshi_0803 at 809.578 kb on + strand, within Dshi_0803 at 809.581 kb on - strand, within Dshi_0803 at 809.586 kb on - strand, within Dshi_0803 at 809.698 kb on - strand, within Dshi_0803 at 809.779 kb on + strand, within Dshi_0803 at 809.805 kb on + strand, within Dshi_0803 at 809.847 kb on + strand, within Dshi_0803 at 809.854 kb on - strand, within Dshi_0803 at 809.920 kb on - strand, within Dshi_0803 at 809.920 kb on - strand, within Dshi_0803 at 809.944 kb on - strand, within Dshi_0803 at 809.975 kb on - strand, within Dshi_0803 at 810.035 kb on + strand, within Dshi_0803 at 810.068 kb on + strand, within Dshi_0803 at 810.103 kb on + strand, within Dshi_0803 at 810.104 kb on + strand, within Dshi_0803 at 810.117 kb on - strand, within Dshi_0803 at 810.117 kb on - strand, within Dshi_0803 at 810.256 kb on + strand, within Dshi_0803 at 810.267 kb on + strand, within Dshi_0803 at 810.336 kb on - strand, within Dshi_0803 at 810.339 kb on + strand, within Dshi_0803 at 810.339 kb on + strand, within Dshi_0803 at 810.353 kb on - strand, within Dshi_0803 at 810.356 kb on + strand, within Dshi_0803 at 810.364 kb on - strand, within Dshi_0803 at 810.364 kb on - strand, within Dshi_0803 at 810.366 kb on + strand, within Dshi_0803 at 810.520 kb on - strand at 810.552 kb on - strand at 810.658 kb on - strand at 810.706 kb on + strand at 810.717 kb on - strand at 810.793 kb on + strand at 810.816 kb on - strand, within Dshi_0804 at 810.859 kb on - strand, within Dshi_0804 at 810.947 kb on + strand, within Dshi_0804 at 810.980 kb on + strand, within Dshi_0804 at 810.980 kb on + strand, within Dshi_0804 at 811.180 kb on - strand, within Dshi_0804 at 811.181 kb on + strand, within Dshi_0804 at 811.276 kb on - strand, within Dshi_0804 at 811.300 kb on - strand, within Dshi_0804 at 811.332 kb on - strand, within Dshi_0804 at 811.336 kb on + strand, within Dshi_0804 at 811.336 kb on + strand, within Dshi_0804 at 811.337 kb on + strand, within Dshi_0804 at 811.344 kb on - strand, within Dshi_0804 at 811.360 kb on + strand, within Dshi_0804 at 811.366 kb on + strand, within Dshi_0804 at 811.396 kb on - strand, within Dshi_0804 at 811.426 kb on - strand, within Dshi_0804 at 811.481 kb on - strand, within Dshi_0804 at 811.481 kb on - strand, within Dshi_0804
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 808,401 - +0.2 808,544 + -1.5 808,544 + -1.3 808,631 - Dshi_0802 0.14 -3.3 808,672 - Dshi_0802 0.20 +2.6 808,727 - Dshi_0802 0.28 -0.1 808,727 - Dshi_0802 0.28 -0.3 808,734 + Dshi_0802 0.29 -1.3 808,734 + Dshi_0802 0.29 +0.6 808,828 + Dshi_0802 0.41 -0.8 808,838 + Dshi_0802 0.43 +2.2 808,838 + Dshi_0802 0.43 +0.6 808,862 + Dshi_0802 0.46 +1.2 808,880 - Dshi_0802 0.49 +1.2 809,008 - Dshi_0802 0.66 -2.3 809,010 - Dshi_0802 0.66 +1.2 809,116 + Dshi_0802 0.81 +0.5 809,179 + Dshi_0802 0.90 -0.9 809,182 - +0.2 809,233 + +0.4 809,271 - +0.2 809,271 - -1.6 809,378 - -0.8 809,573 + Dshi_0803 0.22 -0.6 809,578 + Dshi_0803 0.22 -0.8 809,581 - Dshi_0803 0.22 +0.8 809,586 - Dshi_0803 0.23 -1.1 809,698 - Dshi_0803 0.32 +0.8 809,779 + Dshi_0803 0.38 -1.2 809,805 + Dshi_0803 0.41 -0.3 809,847 + Dshi_0803 0.44 -2.3 809,854 - Dshi_0803 0.45 +0.7 809,920 - Dshi_0803 0.50 +0.5 809,920 - Dshi_0803 0.50 -2.0 809,944 - Dshi_0803 0.52 -0.9 809,975 - Dshi_0803 0.54 -0.8 810,035 + Dshi_0803 0.59 -2.3 810,068 + Dshi_0803 0.62 +0.2 810,103 + Dshi_0803 0.65 -3.3 810,104 + Dshi_0803 0.65 -0.6 810,117 - Dshi_0803 0.66 +1.1 810,117 - Dshi_0803 0.66 -2.8 810,256 + Dshi_0803 0.77 -0.4 810,267 + Dshi_0803 0.78 -1.8 810,336 - Dshi_0803 0.84 -0.8 810,339 + Dshi_0803 0.84 -0.3 810,339 + Dshi_0803 0.84 -1.1 810,353 - Dshi_0803 0.85 +1.0 810,356 + Dshi_0803 0.85 -0.6 810,364 - Dshi_0803 0.86 -0.8 810,364 - Dshi_0803 0.86 -2.4 810,366 + Dshi_0803 0.86 +0.1 810,520 - -0.8 810,552 - +0.4 810,658 - -2.1 810,706 + +1.2 810,717 - +0.2 810,793 + +1.2 810,816 - Dshi_0804 0.10 +1.2 810,859 - Dshi_0804 0.13 +1.2 810,947 + Dshi_0804 0.18 -2.4 810,980 + Dshi_0804 0.21 -0.6 810,980 + Dshi_0804 0.21 +1.0 811,180 - Dshi_0804 0.33 -0.6 811,181 + Dshi_0804 0.33 +1.2 811,276 - Dshi_0804 0.39 +0.2 811,300 - Dshi_0804 0.40 +0.6 811,332 - Dshi_0804 0.42 +1.5 811,336 + Dshi_0804 0.42 -0.2 811,336 + Dshi_0804 0.42 +2.0 811,337 + Dshi_0804 0.43 -0.3 811,344 - Dshi_0804 0.43 +0.2 811,360 + Dshi_0804 0.44 -0.3 811,366 + Dshi_0804 0.44 -0.8 811,396 - Dshi_0804 0.46 -0.6 811,426 - Dshi_0804 0.48 -0.4 811,481 - Dshi_0804 0.51 -0.6 811,481 - Dshi_0804 0.51 +3.8
Or see this region's nucleotide sequence