Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_R0019
Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Chloramphenicol 0.0002 mg/ml |
---|---|---|---|---|---|
remove | |||||
784,882 | - | Dshi_0779 | 0.33 | +1.6 | |
785,031 | - | Dshi_0779 | 0.49 | -0.7 | |
785,234 | - | Dshi_0779 | 0.70 | +0.6 | |
785,288 | - | Dshi_0779 | 0.75 | -1.3 | |
785,330 | - | Dshi_0779 | 0.80 | -0.5 | |
785,477 | - | -0.7 | |||
785,891 | + | Dshi_0780 | 0.21 | -0.3 | |
785,896 | + | Dshi_0780 | 0.21 | -1.6 | |
785,899 | - | Dshi_0780 | 0.22 | -0.9 | |
785,899 | - | Dshi_0780 | 0.22 | -2.9 | |
785,901 | + | Dshi_0780 | 0.22 | -0.9 | |
785,904 | - | Dshi_0780 | 0.22 | -0.1 | |
785,909 | - | Dshi_0780 | 0.23 | -1.9 | |
785,957 | - | Dshi_0780 | 0.28 | -0.7 | |
785,999 | - | Dshi_0780 | 0.32 | +1.5 | |
786,014 | - | Dshi_0780 | 0.34 | +1.3 | |
786,041 | - | +1.3 | |||
786,084 | - | Dshi_0780 | 0.41 | +1.3 | |
786,180 | + | Dshi_0780 | 0.52 | +1.3 | |
786,180 | + | Dshi_0780 | 0.52 | -1.9 | |
786,192 | + | Dshi_0780 | 0.53 | +0.8 | |
786,194 | + | Dshi_0780 | 0.53 | -1.2 | |
786,198 | - | Dshi_0780 | 0.53 | -0.9 | |
786,274 | + | Dshi_0780 | 0.61 | +0.6 | |
786,362 | + | Dshi_0780 | 0.71 | +1.3 | |
786,370 | - | Dshi_0780 | 0.72 | -1.4 | |
786,406 | - | Dshi_0780 | 0.75 | +1.3 | |
786,523 | - | Dshi_0780 | 0.88 | +1.3 | |
786,600 | + | -0.3 | |||
786,621 | + | -2.7 |
Or see this region's nucleotide sequence