Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0770 and Dshi_0771 overlap by 43 nucleotides Dshi_0771 and Dshi_0772 overlap by 7 nucleotides Dshi_0772 and Dshi_0773 overlap by 4 nucleotides Dshi_0773 and Dshi_0774 are separated by 42 nucleotides
Dshi_0770: Dshi_0770 - arsenate reductase and related (RefSeq), at 776,635 to 776,946
_0770
Dshi_0771: Dshi_0771 - DoxX family protein (RefSeq), at 776,904 to 777,470
_0771
Dshi_0772: Dshi_0772 - hypothetical protein (RefSeq), at 777,464 to 778,210
_0772
Dshi_0773: Dshi_0773 - protein of unknown function DUF692 (RefSeq), at 778,207 to 779,157
_0773
Dshi_0774: Dshi_0774 - hypothetical protein (RefSeq), at 779,200 to 779,487
_0774
Position (kb)
777
778
779 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 776.498 kb on + strand at 776.535 kb on + strand at 776.578 kb on + strand at 776.593 kb on + strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.611 kb on - strand at 776.628 kb on + strand at 776.813 kb on + strand, within Dshi_0770 at 776.920 kb on - strand at 776.932 kb on - strand at 776.992 kb on + strand, within Dshi_0771 at 776.995 kb on - strand, within Dshi_0771 at 777.223 kb on + strand, within Dshi_0771 at 777.274 kb on - strand, within Dshi_0771 at 777.285 kb on + strand, within Dshi_0771 at 777.321 kb on + strand, within Dshi_0771 at 777.466 kb on + strand at 777.467 kb on + strand at 777.468 kb on + strand at 777.516 kb on + strand at 777.557 kb on + strand, within Dshi_0772 at 777.565 kb on - strand, within Dshi_0772 at 777.594 kb on + strand, within Dshi_0772 at 777.760 kb on + strand, within Dshi_0772 at 777.787 kb on + strand, within Dshi_0772 at 777.905 kb on - strand, within Dshi_0772 at 777.977 kb on - strand, within Dshi_0772 at 778.007 kb on + strand, within Dshi_0772 at 778.079 kb on - strand, within Dshi_0772 at 778.094 kb on - strand, within Dshi_0772 at 778.345 kb on + strand, within Dshi_0773 at 778.433 kb on + strand, within Dshi_0773 at 778.509 kb on - strand, within Dshi_0773 at 778.623 kb on + strand, within Dshi_0773 at 778.654 kb on + strand, within Dshi_0773 at 778.664 kb on + strand, within Dshi_0773 at 778.664 kb on + strand, within Dshi_0773 at 778.712 kb on + strand, within Dshi_0773 at 778.720 kb on - strand, within Dshi_0773 at 778.720 kb on - strand, within Dshi_0773 at 778.750 kb on + strand, within Dshi_0773 at 778.830 kb on + strand, within Dshi_0773 at 778.843 kb on - strand, within Dshi_0773 at 778.848 kb on - strand, within Dshi_0773 at 778.901 kb on + strand, within Dshi_0773 at 778.901 kb on + strand, within Dshi_0773 at 778.907 kb on + strand, within Dshi_0773
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 776,498 + +1.3 776,535 + -1.2 776,578 + +2.8 776,593 + -3.0 776,601 - -1.7 776,601 - -1.3 776,601 - -1.4 776,601 - +3.6 776,601 - -1.3 776,611 - -2.3 776,628 + +1.3 776,813 + Dshi_0770 0.57 -0.1 776,920 - +3.8 776,932 - -1.1 776,992 + Dshi_0771 0.16 -0.1 776,995 - Dshi_0771 0.16 +2.0 777,223 + Dshi_0771 0.56 -2.5 777,274 - Dshi_0771 0.65 -1.5 777,285 + Dshi_0771 0.67 -1.3 777,321 + Dshi_0771 0.74 +3.4 777,466 + +0.3 777,467 + +4.6 777,468 + +2.8 777,516 + -2.1 777,557 + Dshi_0772 0.12 +2.3 777,565 - Dshi_0772 0.14 -0.3 777,594 + Dshi_0772 0.17 -0.6 777,760 + Dshi_0772 0.40 -0.8 777,787 + Dshi_0772 0.43 +0.1 777,905 - Dshi_0772 0.59 -2.2 777,977 - Dshi_0772 0.69 +0.8 778,007 + Dshi_0772 0.73 +0.3 778,079 - Dshi_0772 0.82 +1.8 778,094 - Dshi_0772 0.84 +1.3 778,345 + Dshi_0773 0.15 -2.0 778,433 + Dshi_0773 0.24 -2.2 778,509 - Dshi_0773 0.32 -1.1 778,623 + Dshi_0773 0.44 +0.0 778,654 + Dshi_0773 0.47 +3.1 778,664 + Dshi_0773 0.48 +0.7 778,664 + Dshi_0773 0.48 +0.3 778,712 + Dshi_0773 0.53 +0.2 778,720 - Dshi_0773 0.54 +1.0 778,720 - Dshi_0773 0.54 -2.3 778,750 + Dshi_0773 0.57 -0.3 778,830 + Dshi_0773 0.66 -1.9 778,843 - Dshi_0773 0.67 -1.5 778,848 - Dshi_0773 0.67 -2.5 778,901 + Dshi_0773 0.73 +3.8 778,901 + Dshi_0773 0.73 -0.2 778,907 + Dshi_0773 0.74 +3.3
Or see this region's nucleotide sequence