Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0744 and Dshi_0745 are separated by 188 nucleotides Dshi_0745 and Dshi_0746 are separated by 97 nucleotides Dshi_0746 and Dshi_0747 are separated by 92 nucleotides
Dshi_0744: Dshi_0744 - prolyl-tRNA synthetase (RefSeq), at 752,138 to 753,475
_0744
Dshi_0745: Dshi_0745 - Redoxin domain protein (RefSeq), at 753,664 to 754,239
_0745
Dshi_0746: Dshi_0746 - MIP family channel protein (RefSeq), at 754,337 to 755,023
_0746
Dshi_0747: Dshi_0747 - lipoprotein releasing system, transmembrane protein, LolC/E family (RefSeq), at 755,116 to 756,402
_0747
Position (kb)
753
754
755 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 753.477 kb on - strand at 753.492 kb on + strand at 753.537 kb on - strand at 753.574 kb on - strand at 753.644 kb on + strand at 753.652 kb on - strand at 753.678 kb on - strand at 753.758 kb on - strand, within Dshi_0745 at 753.796 kb on + strand, within Dshi_0745 at 753.825 kb on + strand, within Dshi_0745 at 753.876 kb on + strand, within Dshi_0745 at 753.908 kb on - strand, within Dshi_0745 at 753.972 kb on - strand, within Dshi_0745 at 754.086 kb on + strand, within Dshi_0745 at 754.105 kb on + strand, within Dshi_0745 at 754.223 kb on - strand at 754.223 kb on - strand at 754.337 kb on - strand at 754.469 kb on - strand, within Dshi_0746 at 754.475 kb on + strand, within Dshi_0746 at 754.483 kb on - strand, within Dshi_0746 at 754.486 kb on + strand, within Dshi_0746 at 754.549 kb on - strand, within Dshi_0746 at 754.554 kb on - strand, within Dshi_0746 at 754.629 kb on - strand, within Dshi_0746 at 754.654 kb on + strand, within Dshi_0746 at 754.658 kb on + strand, within Dshi_0746 at 754.707 kb on + strand, within Dshi_0746 at 754.913 kb on - strand, within Dshi_0746 at 754.935 kb on + strand, within Dshi_0746 at 754.937 kb on - strand, within Dshi_0746 at 754.962 kb on - strand at 754.991 kb on + strand at 754.996 kb on + strand at 755.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 753,477 - -0.3 753,492 + +0.5 753,537 - +1.7 753,574 - +0.4 753,644 + +0.1 753,652 - +0.4 753,678 - -0.0 753,758 - Dshi_0745 0.16 -0.0 753,796 + Dshi_0745 0.23 +0.3 753,825 + Dshi_0745 0.28 -0.8 753,876 + Dshi_0745 0.37 +0.3 753,908 - Dshi_0745 0.42 -0.3 753,972 - Dshi_0745 0.53 -0.3 754,086 + Dshi_0745 0.73 +0.1 754,105 + Dshi_0745 0.77 -3.0 754,223 - -1.5 754,223 - -0.3 754,337 - +1.3 754,469 - Dshi_0746 0.19 +0.7 754,475 + Dshi_0746 0.20 +0.0 754,483 - Dshi_0746 0.21 +1.3 754,486 + Dshi_0746 0.22 +1.3 754,549 - Dshi_0746 0.31 +0.5 754,554 - Dshi_0746 0.32 -0.1 754,629 - Dshi_0746 0.43 +2.1 754,654 + Dshi_0746 0.46 +0.3 754,658 + Dshi_0746 0.47 -0.3 754,707 + Dshi_0746 0.54 +2.3 754,913 - Dshi_0746 0.84 -2.7 754,935 + Dshi_0746 0.87 -1.2 754,937 - Dshi_0746 0.87 -3.0 754,962 - +2.5 754,991 + +1.3 754,996 + +1.3 755,030 - +1.9
Or see this region's nucleotide sequence