Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0745

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0744 and Dshi_0745 are separated by 188 nucleotidesDshi_0745 and Dshi_0746 are separated by 97 nucleotidesDshi_0746 and Dshi_0747 are separated by 92 nucleotides Dshi_0744: Dshi_0744 - prolyl-tRNA synthetase (RefSeq), at 752,138 to 753,475 _0744 Dshi_0745: Dshi_0745 - Redoxin domain protein (RefSeq), at 753,664 to 754,239 _0745 Dshi_0746: Dshi_0746 - MIP family channel protein (RefSeq), at 754,337 to 755,023 _0746 Dshi_0747: Dshi_0747 - lipoprotein releasing system, transmembrane protein, LolC/E family (RefSeq), at 755,116 to 756,402 _0747 Position (kb) 753 754 755Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 753.477 kb on - strandat 753.492 kb on + strandat 753.537 kb on - strandat 753.574 kb on - strandat 753.644 kb on + strandat 753.652 kb on - strandat 753.678 kb on - strandat 753.758 kb on - strand, within Dshi_0745at 753.796 kb on + strand, within Dshi_0745at 753.825 kb on + strand, within Dshi_0745at 753.876 kb on + strand, within Dshi_0745at 753.908 kb on - strand, within Dshi_0745at 753.972 kb on - strand, within Dshi_0745at 754.086 kb on + strand, within Dshi_0745at 754.105 kb on + strand, within Dshi_0745at 754.223 kb on - strandat 754.223 kb on - strandat 754.337 kb on - strandat 754.469 kb on - strand, within Dshi_0746at 754.475 kb on + strand, within Dshi_0746at 754.483 kb on - strand, within Dshi_0746at 754.486 kb on + strand, within Dshi_0746at 754.549 kb on - strand, within Dshi_0746at 754.554 kb on - strand, within Dshi_0746at 754.629 kb on - strand, within Dshi_0746at 754.654 kb on + strand, within Dshi_0746at 754.658 kb on + strand, within Dshi_0746at 754.707 kb on + strand, within Dshi_0746at 754.913 kb on - strand, within Dshi_0746at 754.935 kb on + strand, within Dshi_0746at 754.937 kb on - strand, within Dshi_0746at 754.962 kb on - strandat 754.991 kb on + strandat 754.996 kb on + strandat 755.030 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
remove
753,477 - -0.3
753,492 + +0.5
753,537 - +1.7
753,574 - +0.4
753,644 + +0.1
753,652 - +0.4
753,678 - -0.0
753,758 - Dshi_0745 0.16 -0.0
753,796 + Dshi_0745 0.23 +0.3
753,825 + Dshi_0745 0.28 -0.8
753,876 + Dshi_0745 0.37 +0.3
753,908 - Dshi_0745 0.42 -0.3
753,972 - Dshi_0745 0.53 -0.3
754,086 + Dshi_0745 0.73 +0.1
754,105 + Dshi_0745 0.77 -3.0
754,223 - -1.5
754,223 - -0.3
754,337 - +1.3
754,469 - Dshi_0746 0.19 +0.7
754,475 + Dshi_0746 0.20 +0.0
754,483 - Dshi_0746 0.21 +1.3
754,486 + Dshi_0746 0.22 +1.3
754,549 - Dshi_0746 0.31 +0.5
754,554 - Dshi_0746 0.32 -0.1
754,629 - Dshi_0746 0.43 +2.1
754,654 + Dshi_0746 0.46 +0.3
754,658 + Dshi_0746 0.47 -0.3
754,707 + Dshi_0746 0.54 +2.3
754,913 - Dshi_0746 0.84 -2.7
754,935 + Dshi_0746 0.87 -1.2
754,937 - Dshi_0746 0.87 -3.0
754,962 - +2.5
754,991 + +1.3
754,996 + +1.3
755,030 - +1.9

Or see this region's nucleotide sequence