Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0728 and Dshi_0729 overlap by 4 nucleotides Dshi_0729 and Dshi_0730 overlap by 1 nucleotides Dshi_0730 and Dshi_0731 overlap by 4 nucleotides
Dshi_0728: Dshi_0728 - NADH dehydrogenase (quinone) (RefSeq), at 737,004 to 739,244
_0728
Dshi_0729: Dshi_0729 - Na+/H+ antiporter MnhB subunit-related protein (RefSeq), at 739,241 to 739,693
_0729
Dshi_0730: Dshi_0730 - NADH-ubiquinone oxidoreductase chain 4L (RefSeq), at 739,693 to 740,112
_0730
Dshi_0731: Dshi_0731 - NADH dehydrogenase (quinone) (RefSeq), at 740,109 to 741,644
_0731
Position (kb) 739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 738.274 kb on - strand, within Dshi_0728 at 738.361 kb on + strand, within Dshi_0728 at 738.454 kb on + strand, within Dshi_0728 at 738.459 kb on + strand, within Dshi_0728 at 738.462 kb on - strand, within Dshi_0728 at 738.497 kb on - strand, within Dshi_0728 at 738.510 kb on - strand, within Dshi_0728 at 738.558 kb on + strand, within Dshi_0728 at 738.571 kb on + strand, within Dshi_0728 at 738.681 kb on - strand, within Dshi_0728 at 738.711 kb on + strand, within Dshi_0728 at 738.772 kb on - strand, within Dshi_0728 at 738.789 kb on - strand, within Dshi_0728 at 738.829 kb on - strand, within Dshi_0728 at 738.880 kb on + strand, within Dshi_0728 at 738.885 kb on - strand, within Dshi_0728 at 738.929 kb on + strand, within Dshi_0728 at 739.024 kb on + strand at 739.029 kb on + strand at 739.092 kb on - strand at 739.129 kb on + strand at 739.140 kb on - strand at 739.149 kb on - strand at 739.150 kb on - strand at 739.212 kb on - strand at 739.255 kb on + strand at 739.338 kb on + strand, within Dshi_0729 at 739.596 kb on + strand, within Dshi_0729 at 739.757 kb on - strand, within Dshi_0730 at 739.784 kb on + strand, within Dshi_0730 at 739.871 kb on + strand, within Dshi_0730 at 739.951 kb on + strand, within Dshi_0730 at 739.951 kb on - strand, within Dshi_0730 at 740.056 kb on + strand, within Dshi_0730 at 740.073 kb on + strand at 740.128 kb on + strand at 740.224 kb on + strand at 740.258 kb on - strand at 740.264 kb on + strand, within Dshi_0731 at 740.270 kb on - strand, within Dshi_0731 at 740.272 kb on - strand, within Dshi_0731 at 740.272 kb on - strand, within Dshi_0731 at 740.430 kb on + strand, within Dshi_0731 at 740.437 kb on + strand, within Dshi_0731 at 740.652 kb on + strand, within Dshi_0731 at 740.660 kb on + strand, within Dshi_0731
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 738,274 - Dshi_0728 0.57 -0.8 738,361 + Dshi_0728 0.61 -2.5 738,454 + Dshi_0728 0.65 -3.2 738,459 + Dshi_0728 0.65 -1.2 738,462 - Dshi_0728 0.65 -0.8 738,497 - Dshi_0728 0.67 +2.2 738,510 - Dshi_0728 0.67 -2.8 738,558 + Dshi_0728 0.69 -0.8 738,571 + Dshi_0728 0.70 +0.1 738,681 - Dshi_0728 0.75 +2.2 738,711 + Dshi_0728 0.76 -1.9 738,772 - Dshi_0728 0.79 +1.2 738,789 - Dshi_0728 0.80 -0.2 738,829 - Dshi_0728 0.81 -0.2 738,880 + Dshi_0728 0.84 -1.4 738,885 - Dshi_0728 0.84 +0.1 738,929 + Dshi_0728 0.86 -1.1 739,024 + +3.2 739,029 + +0.7 739,092 - +1.0 739,129 + +1.2 739,140 - -0.3 739,149 - +0.8 739,150 - -0.8 739,212 - +2.2 739,255 + -1.6 739,338 + Dshi_0729 0.21 +1.6 739,596 + Dshi_0729 0.78 +0.1 739,757 - Dshi_0730 0.15 +1.2 739,784 + Dshi_0730 0.22 -1.3 739,871 + Dshi_0730 0.42 -0.8 739,951 + Dshi_0730 0.61 +2.2 739,951 - Dshi_0730 0.61 +1.6 740,056 + Dshi_0730 0.86 +1.2 740,073 + -0.3 740,128 + -1.0 740,224 + -1.7 740,258 - -1.4 740,264 + Dshi_0731 0.10 +2.8 740,270 - Dshi_0731 0.10 -0.6 740,272 - Dshi_0731 0.11 -2.9 740,272 - Dshi_0731 0.11 +0.0 740,430 + Dshi_0731 0.21 +0.3 740,437 + Dshi_0731 0.21 -0.3 740,652 + Dshi_0731 0.35 +4.1 740,660 + Dshi_0731 0.36 -1.3
Or see this region's nucleotide sequence