Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0637

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0635 and Dshi_0636 are separated by 198 nucleotidesDshi_0636 and Dshi_0637 overlap by 4 nucleotidesDshi_0637 and Dshi_0638 are separated by 191 nucleotides Dshi_0635: Dshi_0635 - cyclic nucleotide-binding (RefSeq), at 633,409 to 635,610 _0635 Dshi_0636: Dshi_0636 - phospholipase/Carboxylesterase (RefSeq), at 635,809 to 636,474 _0636 Dshi_0637: Dshi_0637 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 636,471 to 637,394 _0637 Dshi_0638: Dshi_0638 - ABC transporter related (RefSeq), at 637,586 to 638,542 _0638 Position (kb) 636 637 638Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 635.518 kb on - strandat 635.625 kb on - strandat 635.637 kb on + strandat 635.687 kb on + strandat 635.785 kb on + strandat 635.849 kb on - strandat 635.860 kb on + strandat 635.948 kb on - strand, within Dshi_0636at 635.967 kb on - strand, within Dshi_0636at 636.014 kb on - strand, within Dshi_0636at 636.019 kb on + strand, within Dshi_0636at 636.130 kb on - strand, within Dshi_0636at 636.258 kb on + strand, within Dshi_0636at 636.324 kb on + strand, within Dshi_0636at 636.355 kb on + strand, within Dshi_0636at 636.637 kb on - strand, within Dshi_0637at 636.683 kb on - strand, within Dshi_0637at 636.777 kb on - strand, within Dshi_0637at 636.892 kb on + strand, within Dshi_0637at 636.909 kb on + strand, within Dshi_0637at 636.952 kb on - strand, within Dshi_0637at 637.010 kb on - strand, within Dshi_0637at 637.037 kb on + strand, within Dshi_0637at 637.163 kb on - strand, within Dshi_0637at 637.184 kb on - strand, within Dshi_0637at 637.206 kb on + strand, within Dshi_0637at 637.223 kb on + strand, within Dshi_0637at 637.250 kb on + strand, within Dshi_0637at 637.258 kb on + strand, within Dshi_0637at 637.301 kb on + strand, within Dshi_0637at 637.309 kb on - strandat 637.410 kb on - strandat 637.450 kb on + strandat 637.727 kb on - strand, within Dshi_0638at 637.785 kb on + strand, within Dshi_0638at 637.813 kb on + strand, within Dshi_0638at 637.815 kb on + strand, within Dshi_0638at 638.123 kb on - strand, within Dshi_0638at 638.183 kb on - strand, within Dshi_0638at 638.233 kb on - strand, within Dshi_0638at 638.258 kb on - strand, within Dshi_0638at 638.337 kb on + strand, within Dshi_0638at 638.337 kb on + strand, within Dshi_0638at 638.337 kb on + strand, within Dshi_0638at 638.345 kb on - strand, within Dshi_0638at 638.347 kb on + strand, within Dshi_0638

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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635,518 - +0.2
635,625 - +1.1
635,637 + -0.5
635,687 + +1.1
635,785 + -1.8
635,849 - +0.6
635,860 + +2.6
635,948 - Dshi_0636 0.21 -0.9
635,967 - Dshi_0636 0.24 -0.8
636,014 - Dshi_0636 0.31 +1.1
636,019 + Dshi_0636 0.32 -0.8
636,130 - Dshi_0636 0.48 +1.1
636,258 + Dshi_0636 0.67 +0.1
636,324 + Dshi_0636 0.77 -0.5
636,355 + Dshi_0636 0.82 +1.1
636,637 - Dshi_0637 0.18 -2.4
636,683 - Dshi_0637 0.23 +1.1
636,777 - Dshi_0637 0.33 -0.5
636,892 + Dshi_0637 0.46 +0.3
636,909 + Dshi_0637 0.47 -3.2
636,952 - Dshi_0637 0.52 +1.1
637,010 - Dshi_0637 0.58 -2.6
637,037 + Dshi_0637 0.61 -0.3
637,163 - Dshi_0637 0.75 -2.8
637,184 - Dshi_0637 0.77 +1.1
637,206 + Dshi_0637 0.80 -0.6
637,223 + Dshi_0637 0.81 -2.1
637,250 + Dshi_0637 0.84 -0.7
637,258 + Dshi_0637 0.85 -1.9
637,301 + Dshi_0637 0.90 -1.3
637,309 - +0.5
637,410 - -1.9
637,450 + +0.7
637,727 - Dshi_0638 0.15 +2.7
637,785 + Dshi_0638 0.21 -2.4
637,813 + Dshi_0638 0.24 +0.1
637,815 + Dshi_0638 0.24 -0.1
638,123 - Dshi_0638 0.56 -2.3
638,183 - Dshi_0638 0.62 +0.4
638,233 - Dshi_0638 0.68 -2.3
638,258 - Dshi_0638 0.70 -1.8
638,337 + Dshi_0638 0.78 -0.9
638,337 + Dshi_0638 0.78 -0.7
638,337 + Dshi_0638 0.78 -1.8
638,345 - Dshi_0638 0.79 -3.0
638,347 + Dshi_0638 0.80 -0.5

Or see this region's nucleotide sequence