Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0536

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0535 and Dshi_0536 are separated by 26 nucleotidesDshi_0536 and Dshi_0537 are separated by 29 nucleotides Dshi_0535: Dshi_0535 - Transketolase central region (RefSeq), at 519,929 to 520,912 _0535 Dshi_0536: Dshi_0536 - biotin/lipoyl attachment domain-containing protein (RefSeq), at 520,939 to 522,135 _0536 Dshi_0537: Dshi_0537 - carbohydrate kinase FGGY (RefSeq), at 522,165 to 523,658 _0537 Position (kb) 520 521 522 523Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 519.940 kb on + strandat 519.940 kb on + strandat 520.042 kb on + strand, within Dshi_0535at 520.133 kb on + strand, within Dshi_0535at 520.133 kb on + strand, within Dshi_0535at 520.154 kb on + strand, within Dshi_0535at 520.172 kb on + strand, within Dshi_0535at 520.288 kb on + strand, within Dshi_0535at 520.301 kb on - strand, within Dshi_0535at 520.316 kb on + strand, within Dshi_0535at 520.324 kb on - strand, within Dshi_0535at 520.353 kb on + strand, within Dshi_0535at 520.580 kb on + strand, within Dshi_0535at 520.589 kb on - strand, within Dshi_0535at 520.592 kb on + strand, within Dshi_0535at 520.592 kb on + strand, within Dshi_0535at 520.645 kb on - strand, within Dshi_0535at 520.655 kb on - strand, within Dshi_0535at 520.673 kb on + strand, within Dshi_0535at 520.684 kb on + strand, within Dshi_0535at 520.731 kb on + strand, within Dshi_0535at 520.731 kb on + strand, within Dshi_0535at 520.731 kb on - strand, within Dshi_0535at 520.742 kb on - strand, within Dshi_0535at 520.751 kb on - strand, within Dshi_0535at 520.779 kb on - strand, within Dshi_0535at 520.796 kb on + strand, within Dshi_0535at 520.822 kb on - strandat 520.833 kb on + strandat 520.925 kb on + strandat 520.950 kb on + strandat 521.014 kb on - strandat 521.042 kb on - strandat 521.068 kb on + strand, within Dshi_0536at 521.076 kb on - strand, within Dshi_0536at 521.088 kb on + strand, within Dshi_0536at 521.098 kb on + strand, within Dshi_0536at 521.161 kb on + strand, within Dshi_0536at 521.161 kb on + strand, within Dshi_0536at 521.161 kb on + strand, within Dshi_0536at 521.171 kb on + strand, within Dshi_0536at 521.171 kb on + strand, within Dshi_0536at 521.179 kb on - strand, within Dshi_0536at 521.234 kb on + strand, within Dshi_0536at 521.339 kb on + strand, within Dshi_0536at 521.415 kb on + strand, within Dshi_0536at 521.423 kb on - strand, within Dshi_0536at 521.440 kb on + strand, within Dshi_0536at 521.500 kb on - strand, within Dshi_0536at 521.534 kb on + strand, within Dshi_0536at 521.587 kb on - strand, within Dshi_0536at 521.614 kb on - strand, within Dshi_0536at 521.678 kb on + strand, within Dshi_0536at 521.797 kb on - strand, within Dshi_0536at 521.934 kb on - strand, within Dshi_0536at 521.953 kb on + strand, within Dshi_0536at 521.953 kb on + strand, within Dshi_0536at 521.994 kb on + strand, within Dshi_0536at 522.066 kb on + strandat 522.106 kb on - strandat 522.140 kb on + strandat 522.153 kb on - strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.190 kb on + strandat 522.204 kb on - strandat 522.303 kb on + strandat 522.303 kb on + strandat 522.334 kb on - strand, within Dshi_0537at 522.425 kb on + strand, within Dshi_0537at 522.468 kb on + strand, within Dshi_0537at 522.498 kb on + strand, within Dshi_0537at 522.541 kb on + strand, within Dshi_0537at 522.549 kb on - strand, within Dshi_0537at 522.549 kb on - strand, within Dshi_0537at 522.551 kb on + strand, within Dshi_0537at 522.563 kb on + strand, within Dshi_0537at 522.663 kb on - strand, within Dshi_0537at 522.663 kb on - strand, within Dshi_0537at 522.665 kb on + strand, within Dshi_0537at 522.694 kb on - strand, within Dshi_0537at 522.707 kb on - strand, within Dshi_0537at 522.756 kb on + strand, within Dshi_0537at 522.769 kb on - strand, within Dshi_0537at 522.774 kb on - strand, within Dshi_0537at 522.774 kb on - strand, within Dshi_0537at 522.869 kb on + strand, within Dshi_0537at 522.869 kb on + strand, within Dshi_0537at 522.916 kb on + strand, within Dshi_0537at 522.936 kb on + strand, within Dshi_0537at 522.942 kb on - strand, within Dshi_0537at 522.944 kb on - strand, within Dshi_0537at 522.944 kb on - strand, within Dshi_0537at 523.027 kb on - strand, within Dshi_0537at 523.106 kb on + strand, within Dshi_0537

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
remove
519,940 + +0.0
519,940 + -0.9
520,042 + Dshi_0535 0.11 +0.5
520,133 + Dshi_0535 0.21 +1.1
520,133 + Dshi_0535 0.21 -0.0
520,154 + Dshi_0535 0.23 +0.7
520,172 + Dshi_0535 0.25 +3.3
520,288 + Dshi_0535 0.36 +0.3
520,301 - Dshi_0535 0.38 -0.7
520,316 + Dshi_0535 0.39 +1.4
520,324 - Dshi_0535 0.40 +1.8
520,353 + Dshi_0535 0.43 +0.5
520,580 + Dshi_0535 0.66 +0.6
520,589 - Dshi_0535 0.67 +3.7
520,592 + Dshi_0535 0.67 -0.7
520,592 + Dshi_0535 0.67 +0.2
520,645 - Dshi_0535 0.73 +1.1
520,655 - Dshi_0535 0.74 +1.2
520,673 + Dshi_0535 0.76 +0.9
520,684 + Dshi_0535 0.77 -1.0
520,731 + Dshi_0535 0.82 -1.2
520,731 + Dshi_0535 0.82 +0.5
520,731 - Dshi_0535 0.82 +0.8
520,742 - Dshi_0535 0.83 +1.3
520,751 - Dshi_0535 0.84 +1.8
520,779 - Dshi_0535 0.86 +3.2
520,796 + Dshi_0535 0.88 -1.4
520,822 - +0.3
520,833 + +0.6
520,925 + +0.3
520,950 + +0.6
521,014 - +1.8
521,042 - +2.6
521,068 + Dshi_0536 0.11 -0.2
521,076 - Dshi_0536 0.11 +1.0
521,088 + Dshi_0536 0.12 +0.4
521,098 + Dshi_0536 0.13 +0.5
521,161 + Dshi_0536 0.19 +2.2
521,161 + Dshi_0536 0.19 +0.1
521,161 + Dshi_0536 0.19 +1.3
521,171 + Dshi_0536 0.19 -1.6
521,171 + Dshi_0536 0.19 +0.4
521,179 - Dshi_0536 0.20 -0.7
521,234 + Dshi_0536 0.25 +1.4
521,339 + Dshi_0536 0.33 +0.4
521,415 + Dshi_0536 0.40 +1.4
521,423 - Dshi_0536 0.40 +1.7
521,440 + Dshi_0536 0.42 +0.1
521,500 - Dshi_0536 0.47 +0.1
521,534 + Dshi_0536 0.50 -2.0
521,587 - Dshi_0536 0.54 +1.5
521,614 - Dshi_0536 0.56 +0.9
521,678 + Dshi_0536 0.62 +0.2
521,797 - Dshi_0536 0.72 +2.4
521,934 - Dshi_0536 0.83 -0.2
521,953 + Dshi_0536 0.85 +1.2
521,953 + Dshi_0536 0.85 +0.5
521,994 + Dshi_0536 0.88 +0.5
522,066 + -0.2
522,106 - -0.5
522,140 + +4.0
522,153 - +3.8
522,155 + -1.3
522,155 + -1.2
522,155 + -0.6
522,155 + -0.2
522,190 + -1.3
522,204 - +1.8
522,303 + +0.2
522,303 + -0.4
522,334 - Dshi_0537 0.11 +3.3
522,425 + Dshi_0537 0.17 +0.7
522,468 + Dshi_0537 0.20 +0.2
522,498 + Dshi_0537 0.22 -0.3
522,541 + Dshi_0537 0.25 +0.8
522,549 - Dshi_0537 0.26 -1.7
522,549 - Dshi_0537 0.26 -1.1
522,551 + Dshi_0537 0.26 +0.8
522,563 + Dshi_0537 0.27 +1.1
522,663 - Dshi_0537 0.33 +0.0
522,663 - Dshi_0537 0.33 +1.2
522,665 + Dshi_0537 0.33 +1.3
522,694 - Dshi_0537 0.35 +2.3
522,707 - Dshi_0537 0.36 -3.2
522,756 + Dshi_0537 0.40 +1.6
522,769 - Dshi_0537 0.40 +0.7
522,774 - Dshi_0537 0.41 +1.2
522,774 - Dshi_0537 0.41 +1.8
522,869 + Dshi_0537 0.47 -0.3
522,869 + Dshi_0537 0.47 +3.0
522,916 + Dshi_0537 0.50 +2.4
522,936 + Dshi_0537 0.52 +1.7
522,942 - Dshi_0537 0.52 -0.3
522,944 - Dshi_0537 0.52 +1.0
522,944 - Dshi_0537 0.52 +1.4
523,027 - Dshi_0537 0.58 +1.2
523,106 + Dshi_0537 0.63 -1.6

Or see this region's nucleotide sequence