Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0527

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0525 and Dshi_0526 are separated by 27 nucleotidesDshi_0526 and Dshi_0527 overlap by 4 nucleotidesDshi_0527 and Dshi_0528 are separated by 30 nucleotides Dshi_0525: Dshi_0525 - hypothetical protein (RefSeq), at 510,058 to 510,609 _0525 Dshi_0526: Dshi_0526 - Dak phosphatase (RefSeq), at 510,637 to 511,236 _0526 Dshi_0527: Dshi_0527 - Glycerone kinase (RefSeq), at 511,233 to 512,234 _0527 Dshi_0528: Dshi_0528 - Monosaccharide-transporting ATPase (RefSeq), at 512,265 to 513,269 _0528 Position (kb) 511 512 513Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 510.280 kb on - strand, within Dshi_0525at 510.280 kb on - strand, within Dshi_0525at 510.339 kb on + strand, within Dshi_0525at 510.571 kb on + strandat 510.579 kb on - strandat 510.611 kb on - strandat 510.628 kb on + strandat 510.656 kb on - strandat 510.689 kb on - strandat 510.772 kb on + strand, within Dshi_0526at 510.780 kb on - strand, within Dshi_0526at 510.786 kb on + strand, within Dshi_0526at 510.787 kb on - strand, within Dshi_0526at 510.796 kb on + strand, within Dshi_0526at 510.796 kb on + strand, within Dshi_0526at 510.799 kb on - strand, within Dshi_0526at 510.844 kb on + strand, within Dshi_0526at 510.867 kb on + strand, within Dshi_0526at 510.885 kb on - strand, within Dshi_0526at 510.905 kb on + strand, within Dshi_0526at 510.905 kb on + strand, within Dshi_0526at 510.920 kb on + strand, within Dshi_0526at 510.981 kb on - strand, within Dshi_0526at 511.029 kb on + strand, within Dshi_0526at 511.034 kb on + strand, within Dshi_0526at 511.140 kb on + strand, within Dshi_0526at 511.154 kb on + strand, within Dshi_0526at 511.162 kb on - strand, within Dshi_0526at 511.165 kb on + strand, within Dshi_0526at 511.246 kb on - strandat 511.265 kb on - strandat 511.307 kb on + strandat 511.307 kb on + strandat 511.315 kb on - strandat 511.317 kb on - strandat 511.373 kb on - strand, within Dshi_0527at 511.397 kb on + strand, within Dshi_0527at 511.397 kb on + strand, within Dshi_0527at 511.405 kb on - strand, within Dshi_0527at 511.407 kb on + strand, within Dshi_0527at 511.407 kb on + strand, within Dshi_0527at 511.417 kb on + strand, within Dshi_0527at 511.424 kb on - strand, within Dshi_0527at 511.436 kb on + strand, within Dshi_0527at 511.436 kb on + strand, within Dshi_0527at 511.540 kb on + strand, within Dshi_0527at 511.540 kb on - strand, within Dshi_0527at 511.542 kb on + strand, within Dshi_0527at 511.566 kb on + strand, within Dshi_0527at 511.598 kb on - strand, within Dshi_0527at 511.631 kb on - strand, within Dshi_0527at 511.645 kb on + strand, within Dshi_0527at 511.645 kb on + strand, within Dshi_0527at 511.693 kb on + strand, within Dshi_0527at 511.719 kb on - strand, within Dshi_0527at 511.761 kb on + strand, within Dshi_0527at 511.841 kb on + strand, within Dshi_0527at 511.875 kb on + strand, within Dshi_0527at 511.934 kb on + strand, within Dshi_0527at 512.016 kb on + strand, within Dshi_0527at 512.121 kb on + strand, within Dshi_0527at 512.129 kb on - strand, within Dshi_0527at 512.190 kb on + strandat 512.239 kb on + strandat 512.257 kb on - strandat 512.277 kb on + strandat 512.286 kb on + strandat 512.289 kb on + strandat 512.311 kb on + strandat 512.331 kb on + strandat 512.349 kb on - strandat 512.352 kb on - strandat 512.352 kb on - strandat 512.375 kb on + strand, within Dshi_0528at 512.398 kb on + strand, within Dshi_0528at 512.406 kb on + strand, within Dshi_0528at 512.415 kb on - strand, within Dshi_0528at 512.427 kb on + strand, within Dshi_0528at 512.435 kb on - strand, within Dshi_0528at 512.447 kb on - strand, within Dshi_0528at 512.463 kb on - strand, within Dshi_0528at 512.470 kb on - strand, within Dshi_0528at 512.470 kb on - strand, within Dshi_0528at 512.502 kb on - strand, within Dshi_0528at 512.504 kb on + strand, within Dshi_0528at 512.596 kb on + strand, within Dshi_0528at 512.597 kb on - strand, within Dshi_0528at 512.614 kb on - strand, within Dshi_0528at 512.637 kb on - strand, within Dshi_0528at 512.691 kb on + strand, within Dshi_0528at 512.699 kb on - strand, within Dshi_0528at 512.715 kb on + strand, within Dshi_0528at 512.732 kb on + strand, within Dshi_0528at 512.738 kb on - strand, within Dshi_0528at 512.796 kb on + strand, within Dshi_0528at 512.796 kb on + strand, within Dshi_0528at 512.796 kb on + strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.851 kb on - strand, within Dshi_0528at 512.862 kb on - strand, within Dshi_0528at 512.932 kb on + strand, within Dshi_0528at 512.939 kb on + strand, within Dshi_0528at 512.939 kb on + strand, within Dshi_0528at 512.947 kb on - strand, within Dshi_0528at 512.965 kb on - strandat 513.056 kb on + strand, within Dshi_0528at 513.093 kb on + strand, within Dshi_0528at 513.093 kb on + strand, within Dshi_0528at 513.102 kb on - strand, within Dshi_0528at 513.190 kb on - strandat 513.231 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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510,280 - Dshi_0525 0.40 +0.9
510,280 - Dshi_0525 0.40 +1.0
510,339 + Dshi_0525 0.51 -0.0
510,571 + +1.3
510,579 - +2.0
510,611 - +0.3
510,628 + +1.3
510,656 - +4.0
510,689 - +3.3
510,772 + Dshi_0526 0.23 -0.5
510,780 - Dshi_0526 0.24 +0.6
510,786 + Dshi_0526 0.25 +0.4
510,787 - Dshi_0526 0.25 +0.3
510,796 + Dshi_0526 0.27 -0.2
510,796 + Dshi_0526 0.27 -0.1
510,799 - Dshi_0526 0.27 -0.0
510,844 + Dshi_0526 0.34 +1.0
510,867 + Dshi_0526 0.38 +1.3
510,885 - Dshi_0526 0.41 +0.7
510,905 + Dshi_0526 0.45 -1.4
510,905 + Dshi_0526 0.45 +0.9
510,920 + Dshi_0526 0.47 -0.7
510,981 - Dshi_0526 0.57 +1.2
511,029 + Dshi_0526 0.65 -2.5
511,034 + Dshi_0526 0.66 +1.2
511,140 + Dshi_0526 0.84 -1.4
511,154 + Dshi_0526 0.86 -0.8
511,162 - Dshi_0526 0.88 +0.2
511,165 + Dshi_0526 0.88 -0.6
511,246 - +0.3
511,265 - +0.3
511,307 + -0.0
511,307 + +0.6
511,315 - +0.5
511,317 - +0.7
511,373 - Dshi_0527 0.14 -0.1
511,397 + Dshi_0527 0.16 -0.0
511,397 + Dshi_0527 0.16 -0.1
511,405 - Dshi_0527 0.17 -0.2
511,407 + Dshi_0527 0.17 +1.7
511,407 + Dshi_0527 0.17 +0.1
511,417 + Dshi_0527 0.18 -0.7
511,424 - Dshi_0527 0.19 -1.0
511,436 + Dshi_0527 0.20 -1.3
511,436 + Dshi_0527 0.20 -1.3
511,540 + Dshi_0527 0.31 +0.5
511,540 - Dshi_0527 0.31 +2.9
511,542 + Dshi_0527 0.31 +3.3
511,566 + Dshi_0527 0.33 +0.1
511,598 - Dshi_0527 0.36 -0.0
511,631 - Dshi_0527 0.40 -0.3
511,645 + Dshi_0527 0.41 +3.0
511,645 + Dshi_0527 0.41 +0.1
511,693 + Dshi_0527 0.46 -0.6
511,719 - Dshi_0527 0.49 -0.6
511,761 + Dshi_0527 0.53 +0.3
511,841 + Dshi_0527 0.61 +0.9
511,875 + Dshi_0527 0.64 +1.9
511,934 + Dshi_0527 0.70 -3.3
512,016 + Dshi_0527 0.78 -0.4
512,121 + Dshi_0527 0.89 -1.6
512,129 - Dshi_0527 0.89 -0.3
512,190 + +0.5
512,239 + +1.4
512,257 - +2.1
512,277 + -0.1
512,286 + +1.7
512,289 + +0.5
512,311 + +0.2
512,331 + +0.5
512,349 - +3.0
512,352 - +1.8
512,352 - +0.1
512,375 + Dshi_0528 0.11 -0.1
512,398 + Dshi_0528 0.13 +1.7
512,406 + Dshi_0528 0.14 +0.6
512,415 - Dshi_0528 0.15 -2.9
512,427 + Dshi_0528 0.16 -1.6
512,435 - Dshi_0528 0.17 -1.6
512,447 - Dshi_0528 0.18 +0.6
512,463 - Dshi_0528 0.20 +0.5
512,470 - Dshi_0528 0.20 -0.0
512,470 - Dshi_0528 0.20 +0.3
512,502 - Dshi_0528 0.24 +2.0
512,504 + Dshi_0528 0.24 +1.0
512,596 + Dshi_0528 0.33 +1.7
512,597 - Dshi_0528 0.33 +1.2
512,614 - Dshi_0528 0.35 +0.7
512,637 - Dshi_0528 0.37 +0.5
512,691 + Dshi_0528 0.42 -0.5
512,699 - Dshi_0528 0.43 -1.4
512,715 + Dshi_0528 0.45 +1.7
512,732 + Dshi_0528 0.46 +0.7
512,738 - Dshi_0528 0.47 +2.2
512,796 + Dshi_0528 0.53 +0.1
512,796 + Dshi_0528 0.53 -0.7
512,796 + Dshi_0528 0.53 +1.5
512,804 - Dshi_0528 0.54 -1.2
512,804 - Dshi_0528 0.54 +0.4
512,804 - Dshi_0528 0.54 +0.9
512,804 - Dshi_0528 0.54 +0.5
512,804 - Dshi_0528 0.54 +0.2
512,851 - Dshi_0528 0.58 +0.7
512,862 - Dshi_0528 0.59 +0.4
512,932 + Dshi_0528 0.66 +0.9
512,939 + Dshi_0528 0.67 +1.0
512,939 + Dshi_0528 0.67 +0.3
512,947 - Dshi_0528 0.68 +1.5
512,965 - +2.0
513,056 + Dshi_0528 0.79 +0.3
513,093 + Dshi_0528 0.82 -0.4
513,093 + Dshi_0528 0.82 +0.2
513,102 - Dshi_0528 0.83 +0.8
513,190 - +2.1
513,231 - +0.7

Or see this region's nucleotide sequence