Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0507 and Dshi_0508 are separated by 183 nucleotides Dshi_0508 and Dshi_0509 are separated by 93 nucleotides
Dshi_0507: Dshi_0507 - MRP-like protein (ATP/GTP-binding protein) (RefSeq), at 492,087 to 493,133
_0507
Dshi_0508: Dshi_0508 - cytochrome c class I (RefSeq), at 493,317 to 494,531
_0508
Dshi_0509: Dshi_0509 - hypothetical protein (RefSeq), at 494,625 to 495,407
_0509
Position (kb) 493
494
495 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 492.335 kb on + strand, within Dshi_0507 at 492.399 kb on + strand, within Dshi_0507 at 492.480 kb on - strand, within Dshi_0507 at 492.602 kb on + strand, within Dshi_0507 at 492.610 kb on - strand, within Dshi_0507 at 492.675 kb on - strand, within Dshi_0507 at 492.776 kb on - strand, within Dshi_0507 at 492.777 kb on - strand, within Dshi_0507 at 492.820 kb on - strand, within Dshi_0507 at 492.950 kb on + strand, within Dshi_0507 at 492.985 kb on - strand, within Dshi_0507 at 492.998 kb on + strand, within Dshi_0507 at 493.021 kb on + strand, within Dshi_0507 at 493.043 kb on + strand at 493.066 kb on - strand at 493.215 kb on - strand at 493.243 kb on - strand at 493.335 kb on - strand at 493.359 kb on + strand at 493.418 kb on + strand at 493.597 kb on + strand, within Dshi_0508 at 493.615 kb on - strand, within Dshi_0508 at 493.720 kb on + strand, within Dshi_0508 at 493.787 kb on - strand, within Dshi_0508 at 493.800 kb on + strand, within Dshi_0508 at 493.831 kb on + strand, within Dshi_0508 at 493.893 kb on + strand, within Dshi_0508 at 493.901 kb on - strand, within Dshi_0508 at 493.965 kb on + strand, within Dshi_0508 at 494.022 kb on + strand, within Dshi_0508 at 494.058 kb on - strand, within Dshi_0508 at 494.067 kb on - strand, within Dshi_0508 at 494.103 kb on - strand, within Dshi_0508 at 494.197 kb on - strand, within Dshi_0508 at 494.236 kb on + strand, within Dshi_0508 at 494.236 kb on + strand, within Dshi_0508 at 494.236 kb on + strand, within Dshi_0508 at 494.266 kb on + strand, within Dshi_0508 at 494.280 kb on - strand, within Dshi_0508 at 494.302 kb on + strand, within Dshi_0508 at 494.302 kb on + strand, within Dshi_0508 at 494.310 kb on - strand, within Dshi_0508 at 494.370 kb on + strand, within Dshi_0508 at 494.378 kb on - strand, within Dshi_0508 at 494.425 kb on - strand at 494.436 kb on - strand at 494.458 kb on + strand at 494.468 kb on - strand at 494.559 kb on + strand at 494.559 kb on + strand at 494.577 kb on - strand at 494.623 kb on + strand at 494.655 kb on + strand at 494.697 kb on - strand at 494.742 kb on + strand, within Dshi_0509 at 494.793 kb on + strand, within Dshi_0509 at 494.866 kb on - strand, within Dshi_0509 at 494.926 kb on + strand, within Dshi_0509 at 494.948 kb on + strand, within Dshi_0509 at 495.121 kb on - strand, within Dshi_0509 at 495.131 kb on - strand, within Dshi_0509 at 495.154 kb on - strand, within Dshi_0509 at 495.156 kb on + strand, within Dshi_0509 at 495.166 kb on - strand, within Dshi_0509 at 495.203 kb on + strand, within Dshi_0509 at 495.211 kb on - strand, within Dshi_0509 at 495.213 kb on + strand, within Dshi_0509 at 495.216 kb on + strand, within Dshi_0509 at 495.218 kb on + strand, within Dshi_0509 at 495.309 kb on + strand, within Dshi_0509 at 495.391 kb on + strand at 495.526 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 492,335 + Dshi_0507 0.24 +1.3 492,399 + Dshi_0507 0.30 -0.8 492,480 - Dshi_0507 0.38 -2.4 492,602 + Dshi_0507 0.49 +0.3 492,610 - Dshi_0507 0.50 -0.6 492,675 - Dshi_0507 0.56 -3.3 492,776 - Dshi_0507 0.66 -0.6 492,777 - Dshi_0507 0.66 +0.9 492,820 - Dshi_0507 0.70 -1.9 492,950 + Dshi_0507 0.82 +0.1 492,985 - Dshi_0507 0.86 +0.3 492,998 + Dshi_0507 0.87 -0.0 493,021 + Dshi_0507 0.89 +1.2 493,043 + +2.4 493,066 - -0.5 493,215 - -0.4 493,243 - +0.8 493,335 - +3.8 493,359 + +0.8 493,418 + +0.2 493,597 + Dshi_0508 0.23 +0.4 493,615 - Dshi_0508 0.25 +1.0 493,720 + Dshi_0508 0.33 +1.3 493,787 - Dshi_0508 0.39 -3.2 493,800 + Dshi_0508 0.40 -0.0 493,831 + Dshi_0508 0.42 +5.0 493,893 + Dshi_0508 0.47 -1.6 493,901 - Dshi_0508 0.48 +0.4 493,965 + Dshi_0508 0.53 -0.2 494,022 + Dshi_0508 0.58 -1.0 494,058 - Dshi_0508 0.61 +1.2 494,067 - Dshi_0508 0.62 +0.6 494,103 - Dshi_0508 0.65 -1.0 494,197 - Dshi_0508 0.72 +2.1 494,236 + Dshi_0508 0.76 +2.0 494,236 + Dshi_0508 0.76 +0.1 494,236 + Dshi_0508 0.76 -2.1 494,266 + Dshi_0508 0.78 -0.0 494,280 - Dshi_0508 0.79 -1.3 494,302 + Dshi_0508 0.81 +1.2 494,302 + Dshi_0508 0.81 -0.6 494,310 - Dshi_0508 0.82 -2.5 494,370 + Dshi_0508 0.87 +0.3 494,378 - Dshi_0508 0.87 +0.6 494,425 - +0.1 494,436 - +2.8 494,458 + +2.0 494,468 - +0.5 494,559 + +0.2 494,559 + +1.0 494,577 - +0.0 494,623 + +1.0 494,655 + +0.3 494,697 - +0.5 494,742 + Dshi_0509 0.15 -0.9 494,793 + Dshi_0509 0.21 +0.1 494,866 - Dshi_0509 0.31 -0.4 494,926 + Dshi_0509 0.38 +1.0 494,948 + Dshi_0509 0.41 +0.3 495,121 - Dshi_0509 0.63 +0.0 495,131 - Dshi_0509 0.65 +0.5 495,154 - Dshi_0509 0.68 +3.4 495,156 + Dshi_0509 0.68 -1.9 495,166 - Dshi_0509 0.69 +0.7 495,203 + Dshi_0509 0.74 +0.2 495,211 - Dshi_0509 0.75 -4.2 495,213 + Dshi_0509 0.75 -1.6 495,216 + Dshi_0509 0.75 +2.1 495,218 + Dshi_0509 0.76 -0.5 495,309 + Dshi_0509 0.87 -0.6 495,391 + +0.5 495,526 - +0.8
Or see this region's nucleotide sequence