Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0496

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0494 and Dshi_0495 are separated by 58 nucleotidesDshi_0495 and Dshi_0496 are separated by 206 nucleotidesDshi_0496 and Dshi_0497 are separated by 99 nucleotidesDshi_0497 and Dshi_0498 overlap by 4 nucleotides Dshi_0494: Dshi_0494 - NnrS family protein (RefSeq), at 478,748 to 480,028 _0494 Dshi_0495: Dshi_0495 - hypothetical protein (RefSeq), at 480,087 to 480,497 _0495 Dshi_0496: Dshi_0496 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 480,704 to 482,722 _0496 Dshi_0497: Dshi_0497 - hypothetical protein (RefSeq), at 482,822 to 483,556 _0497 Dshi_0498: Dshi_0498 - hypothetical protein (RefSeq), at 483,553 to 484,110 _0498 Position (kb) 480 481 482 483Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 479.714 kb on - strand, within Dshi_0494at 479.723 kb on + strand, within Dshi_0494at 479.853 kb on + strand, within Dshi_0494at 479.932 kb on + strandat 479.947 kb on + strandat 479.987 kb on - strandat 480.109 kb on - strandat 480.139 kb on + strand, within Dshi_0495at 480.216 kb on + strand, within Dshi_0495at 480.264 kb on + strand, within Dshi_0495at 480.336 kb on + strand, within Dshi_0495at 480.393 kb on + strand, within Dshi_0495at 480.393 kb on + strand, within Dshi_0495at 480.451 kb on + strand, within Dshi_0495at 480.456 kb on + strand, within Dshi_0495at 480.478 kb on + strandat 480.478 kb on - strandat 480.486 kb on - strandat 480.497 kb on + strandat 480.497 kb on + strandat 480.531 kb on + strandat 480.626 kb on - strandat 480.658 kb on + strandat 480.660 kb on + strandat 480.668 kb on + strandat 480.668 kb on - strandat 480.676 kb on - strandat 480.676 kb on - strandat 480.676 kb on - strandat 480.689 kb on - strandat 480.697 kb on - strandat 480.720 kb on - strandat 480.773 kb on + strandat 480.829 kb on - strandat 480.836 kb on - strandat 480.863 kb on + strandat 480.888 kb on - strandat 480.888 kb on - strandat 480.892 kb on - strandat 480.920 kb on + strand, within Dshi_0496at 480.988 kb on - strand, within Dshi_0496at 481.038 kb on + strand, within Dshi_0496at 481.046 kb on + strand, within Dshi_0496at 481.084 kb on + strand, within Dshi_0496at 481.092 kb on - strand, within Dshi_0496at 481.123 kb on + strand, within Dshi_0496at 481.134 kb on + strand, within Dshi_0496at 481.134 kb on + strand, within Dshi_0496at 481.140 kb on + strand, within Dshi_0496at 481.142 kb on - strand, within Dshi_0496at 481.142 kb on - strand, within Dshi_0496at 481.165 kb on - strand, within Dshi_0496at 481.181 kb on + strand, within Dshi_0496at 481.189 kb on - strand, within Dshi_0496at 481.295 kb on + strand, within Dshi_0496at 481.296 kb on - strand, within Dshi_0496at 481.320 kb on + strand, within Dshi_0496at 481.325 kb on - strand, within Dshi_0496at 481.334 kb on + strand, within Dshi_0496at 481.353 kb on - strand, within Dshi_0496at 481.378 kb on + strand, within Dshi_0496at 481.378 kb on + strand, within Dshi_0496at 481.386 kb on - strand, within Dshi_0496at 481.390 kb on - strand, within Dshi_0496at 481.413 kb on + strand, within Dshi_0496at 481.428 kb on + strand, within Dshi_0496at 481.461 kb on + strand, within Dshi_0496at 481.461 kb on + strand, within Dshi_0496at 481.469 kb on - strand, within Dshi_0496at 481.527 kb on + strand, within Dshi_0496at 481.527 kb on + strand, within Dshi_0496at 481.646 kb on + strand, within Dshi_0496at 481.650 kb on - strand, within Dshi_0496at 481.709 kb on - strand, within Dshi_0496at 481.737 kb on - strand, within Dshi_0496at 481.760 kb on - strand, within Dshi_0496at 481.977 kb on + strand, within Dshi_0496at 481.985 kb on - strand, within Dshi_0496at 481.985 kb on - strand, within Dshi_0496at 482.061 kb on + strand, within Dshi_0496at 482.108 kb on - strand, within Dshi_0496at 482.126 kb on - strand, within Dshi_0496at 482.139 kb on + strand, within Dshi_0496at 482.147 kb on + strand, within Dshi_0496at 482.180 kb on + strand, within Dshi_0496at 482.190 kb on + strand, within Dshi_0496at 482.280 kb on + strand, within Dshi_0496at 482.329 kb on + strand, within Dshi_0496at 482.330 kb on + strand, within Dshi_0496at 482.336 kb on + strand, within Dshi_0496at 482.349 kb on - strand, within Dshi_0496at 482.351 kb on + strand, within Dshi_0496at 482.351 kb on + strand, within Dshi_0496at 482.373 kb on - strand, within Dshi_0496at 482.383 kb on - strand, within Dshi_0496at 482.511 kb on + strand, within Dshi_0496at 482.519 kb on - strand, within Dshi_0496at 482.540 kb on + strandat 482.558 kb on + strandat 482.564 kb on + strandat 482.564 kb on + strandat 482.564 kb on + strandat 482.606 kb on - strandat 482.612 kb on - strandat 482.637 kb on + strandat 482.689 kb on - strandat 482.695 kb on - strandat 482.755 kb on - strandat 482.769 kb on - strandat 482.776 kb on + strandat 482.776 kb on + strandat 482.776 kb on + strandat 482.776 kb on - strandat 482.784 kb on - strandat 482.784 kb on - strandat 482.784 kb on - strandat 482.816 kb on + strandat 482.824 kb on - strandat 482.859 kb on - strandat 482.871 kb on + strandat 482.879 kb on - strandat 482.895 kb on - strandat 482.900 kb on - strand, within Dshi_0497at 482.922 kb on - strand, within Dshi_0497at 482.934 kb on + strand, within Dshi_0497at 482.939 kb on + strand, within Dshi_0497at 482.961 kb on - strand, within Dshi_0497at 482.996 kb on - strand, within Dshi_0497at 483.001 kb on - strand, within Dshi_0497at 483.059 kb on + strand, within Dshi_0497at 483.094 kb on - strand, within Dshi_0497at 483.176 kb on - strand, within Dshi_0497at 483.205 kb on + strand, within Dshi_0497at 483.226 kb on + strand, within Dshi_0497at 483.274 kb on + strand, within Dshi_0497at 483.344 kb on + strand, within Dshi_0497at 483.344 kb on + strand, within Dshi_0497at 483.344 kb on - strand, within Dshi_0497at 483.395 kb on + strand, within Dshi_0497at 483.396 kb on - strand, within Dshi_0497at 483.398 kb on + strand, within Dshi_0497at 483.403 kb on + strand, within Dshi_0497at 483.424 kb on - strand, within Dshi_0497at 483.429 kb on - strand, within Dshi_0497at 483.436 kb on + strand, within Dshi_0497at 483.436 kb on - strand, within Dshi_0497at 483.545 kb on - strandat 483.569 kb on + strandat 483.620 kb on + strand, within Dshi_0498at 483.628 kb on - strand, within Dshi_0498at 483.628 kb on - strand, within Dshi_0498

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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479,714 - Dshi_0494 0.75 -0.5
479,723 + Dshi_0494 0.76 +0.5
479,853 + Dshi_0494 0.86 -0.9
479,932 + -0.6
479,947 + +0.8
479,987 - +0.4
480,109 - +2.4
480,139 + Dshi_0495 0.13 -2.2
480,216 + Dshi_0495 0.31 +1.8
480,264 + Dshi_0495 0.43 -2.6
480,336 + Dshi_0495 0.61 +2.5
480,393 + Dshi_0495 0.74 -3.8
480,393 + Dshi_0495 0.74 -0.5
480,451 + Dshi_0495 0.89 -1.5
480,456 + Dshi_0495 0.90 +1.9
480,478 + -0.3
480,478 - +0.3
480,486 - -1.6
480,497 + -0.9
480,497 + -1.4
480,531 + -2.3
480,626 - +2.5
480,658 + -0.9
480,660 + +0.9
480,668 + -3.5
480,668 - -1.4
480,676 - +0.9
480,676 - +0.9
480,676 - +0.9
480,689 - -2.3
480,697 - -0.1
480,720 - -0.1
480,773 + -0.6
480,829 - -1.0
480,836 - -1.6
480,863 + -0.6
480,888 - +0.7
480,888 - -0.4
480,892 - -0.8
480,920 + Dshi_0496 0.11 +0.8
480,988 - Dshi_0496 0.14 +1.8
481,038 + Dshi_0496 0.17 -0.9
481,046 + Dshi_0496 0.17 -0.3
481,084 + Dshi_0496 0.19 +0.3
481,092 - Dshi_0496 0.19 -0.4
481,123 + Dshi_0496 0.21 +0.5
481,134 + Dshi_0496 0.21 +0.3
481,134 + Dshi_0496 0.21 +1.6
481,140 + Dshi_0496 0.22 -1.1
481,142 - Dshi_0496 0.22 +2.5
481,142 - Dshi_0496 0.22 -0.2
481,165 - Dshi_0496 0.23 +0.8
481,181 + Dshi_0496 0.24 +0.9
481,189 - Dshi_0496 0.24 -1.6
481,295 + Dshi_0496 0.29 +0.9
481,296 - Dshi_0496 0.29 -0.3
481,320 + Dshi_0496 0.31 +2.2
481,325 - Dshi_0496 0.31 +0.9
481,334 + Dshi_0496 0.31 +0.3
481,353 - Dshi_0496 0.32 +0.4
481,378 + Dshi_0496 0.33 +0.6
481,378 + Dshi_0496 0.33 -1.1
481,386 - Dshi_0496 0.34 +0.9
481,390 - Dshi_0496 0.34 -0.8
481,413 + Dshi_0496 0.35 -2.5
481,428 + Dshi_0496 0.36 -0.6
481,461 + Dshi_0496 0.37 +0.4
481,461 + Dshi_0496 0.37 +0.9
481,469 - Dshi_0496 0.38 +1.1
481,527 + Dshi_0496 0.41 -0.2
481,527 + Dshi_0496 0.41 -0.7
481,646 + Dshi_0496 0.47 -0.2
481,650 - Dshi_0496 0.47 +0.1
481,709 - Dshi_0496 0.50 -1.4
481,737 - Dshi_0496 0.51 +1.2
481,760 - Dshi_0496 0.52 +0.5
481,977 + Dshi_0496 0.63 -2.8
481,985 - Dshi_0496 0.63 +1.1
481,985 - Dshi_0496 0.63 -1.7
482,061 + Dshi_0496 0.67 +1.1
482,108 - Dshi_0496 0.70 -1.2
482,126 - Dshi_0496 0.70 -0.9
482,139 + Dshi_0496 0.71 +0.9
482,147 + Dshi_0496 0.71 -1.5
482,180 + Dshi_0496 0.73 +0.5
482,190 + Dshi_0496 0.74 -0.2
482,280 + Dshi_0496 0.78 -0.5
482,329 + Dshi_0496 0.80 +1.2
482,330 + Dshi_0496 0.81 +3.8
482,336 + Dshi_0496 0.81 +0.9
482,349 - Dshi_0496 0.81 +1.4
482,351 + Dshi_0496 0.82 +0.9
482,351 + Dshi_0496 0.82 +1.6
482,373 - Dshi_0496 0.83 -0.6
482,383 - Dshi_0496 0.83 +0.4
482,511 + Dshi_0496 0.89 -1.7
482,519 - Dshi_0496 0.90 -1.4
482,540 + -0.2
482,558 + -0.6
482,564 + +0.4
482,564 + -0.4
482,564 + +2.5
482,606 - -1.4
482,612 - -0.4
482,637 + -0.7
482,689 - -1.4
482,695 - +3.8
482,755 - -4.0
482,769 - -0.6
482,776 + -3.0
482,776 + -0.8
482,776 + -1.8
482,776 - -0.2
482,784 - +1.7
482,784 - +0.2
482,784 - +1.0
482,816 + -3.6
482,824 - +0.6
482,859 - +0.2
482,871 + +1.2
482,879 - +1.2
482,895 - +0.6
482,900 - Dshi_0497 0.11 -1.0
482,922 - Dshi_0497 0.14 -0.8
482,934 + Dshi_0497 0.15 -0.6
482,939 + Dshi_0497 0.16 +0.7
482,961 - Dshi_0497 0.19 +1.5
482,996 - Dshi_0497 0.24 +1.0
483,001 - Dshi_0497 0.24 +0.3
483,059 + Dshi_0497 0.32 +0.7
483,094 - Dshi_0497 0.37 -0.6
483,176 - Dshi_0497 0.48 +3.0
483,205 + Dshi_0497 0.52 -2.7
483,226 + Dshi_0497 0.55 -3.6
483,274 + Dshi_0497 0.61 +0.6
483,344 + Dshi_0497 0.71 -1.0
483,344 + Dshi_0497 0.71 +1.7
483,344 - Dshi_0497 0.71 +0.5
483,395 + Dshi_0497 0.78 +2.5
483,396 - Dshi_0497 0.78 +2.3
483,398 + Dshi_0497 0.78 +0.5
483,403 + Dshi_0497 0.79 +2.2
483,424 - Dshi_0497 0.82 +1.3
483,429 - Dshi_0497 0.83 +0.3
483,436 + Dshi_0497 0.84 -1.8
483,436 - Dshi_0497 0.84 +0.7
483,545 - +1.6
483,569 + +0.4
483,620 + Dshi_0498 0.12 +0.9
483,628 - Dshi_0498 0.13 +0.3
483,628 - Dshi_0498 0.13 +1.9

Or see this region's nucleotide sequence