Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0429

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0428 and Dshi_0429 are separated by 112 nucleotidesDshi_0429 and Dshi_0430 are separated by 22 nucleotidesDshi_0430 and Dshi_0431 are separated by 203 nucleotides Dshi_0428: Dshi_0428 - Poly-beta-hydroxybutyrate polymerase domain protein (RefSeq), at 419,269 to 421,152 _0428 Dshi_0429: Dshi_0429 - uncharacterized conserved coiled coil protein (RefSeq), at 421,265 to 421,552 _0429 Dshi_0430: Dshi_0430 - hypothetical protein (RefSeq), at 421,575 to 422,009 _0430 Dshi_0431: Dshi_0431 - C4-dicarboxylate anaerobic carrier (RefSeq), at 422,213 to 423,661 _0431 Position (kb) 421 422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 420.282 kb on + strand, within Dshi_0428at 420.291 kb on + strand, within Dshi_0428at 420.300 kb on + strand, within Dshi_0428at 420.325 kb on + strand, within Dshi_0428at 420.343 kb on - strand, within Dshi_0428at 420.361 kb on - strand, within Dshi_0428at 420.364 kb on - strand, within Dshi_0428at 420.380 kb on + strand, within Dshi_0428at 420.395 kb on + strand, within Dshi_0428at 420.416 kb on + strand, within Dshi_0428at 420.416 kb on + strand, within Dshi_0428at 420.416 kb on - strand, within Dshi_0428at 420.500 kb on - strand, within Dshi_0428at 420.510 kb on + strand, within Dshi_0428at 420.515 kb on - strand, within Dshi_0428at 420.596 kb on + strand, within Dshi_0428at 420.606 kb on - strand, within Dshi_0428at 420.606 kb on - strand, within Dshi_0428at 420.674 kb on - strand, within Dshi_0428at 420.685 kb on - strand, within Dshi_0428at 420.686 kb on + strand, within Dshi_0428at 420.712 kb on - strand, within Dshi_0428at 420.727 kb on + strand, within Dshi_0428at 420.734 kb on + strand, within Dshi_0428at 420.884 kb on + strand, within Dshi_0428at 420.889 kb on + strand, within Dshi_0428at 420.938 kb on - strand, within Dshi_0428at 420.945 kb on + strand, within Dshi_0428at 420.945 kb on + strand, within Dshi_0428at 420.953 kb on - strand, within Dshi_0428at 420.969 kb on + strandat 421.017 kb on - strandat 421.019 kb on + strandat 421.072 kb on - strandat 421.103 kb on - strandat 421.133 kb on + strandat 421.141 kb on - strandat 421.154 kb on - strandat 421.188 kb on + strandat 421.188 kb on + strandat 421.188 kb on + strandat 421.232 kb on + strandat 421.245 kb on - strandat 421.251 kb on - strandat 421.251 kb on - strandat 421.259 kb on - strandat 421.263 kb on + strandat 421.271 kb on - strandat 421.320 kb on + strand, within Dshi_0429at 421.351 kb on - strand, within Dshi_0429at 421.355 kb on + strand, within Dshi_0429at 421.415 kb on - strand, within Dshi_0429at 421.536 kb on + strandat 421.555 kb on + strandat 421.573 kb on + strandat 421.573 kb on + strandat 421.581 kb on - strandat 421.582 kb on + strandat 421.582 kb on + strandat 421.590 kb on - strandat 421.590 kb on - strandat 421.599 kb on - strandat 421.600 kb on + strandat 421.610 kb on - strandat 421.752 kb on - strand, within Dshi_0430at 421.796 kb on - strand, within Dshi_0430at 421.801 kb on - strand, within Dshi_0430at 421.923 kb on - strand, within Dshi_0430at 421.956 kb on + strand, within Dshi_0430at 421.969 kb on - strandat 422.007 kb on - strandat 422.007 kb on - strandat 422.068 kb on + strandat 422.081 kb on - strandat 422.081 kb on - strandat 422.094 kb on + strandat 422.121 kb on + strandat 422.129 kb on - strandat 422.160 kb on - strandat 422.253 kb on + strandat 422.266 kb on + strandat 422.315 kb on + strandat 422.315 kb on + strandat 422.323 kb on - strandat 422.325 kb on + strandat 422.325 kb on + strandat 422.328 kb on - strandat 422.366 kb on + strand, within Dshi_0431at 422.434 kb on - strand, within Dshi_0431at 422.464 kb on + strand, within Dshi_0431at 422.478 kb on + strand, within Dshi_0431at 422.479 kb on - strand, within Dshi_0431at 422.517 kb on - strand, within Dshi_0431

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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420,282 + Dshi_0428 0.54 +0.1
420,291 + Dshi_0428 0.54 +0.2
420,300 + Dshi_0428 0.55 -0.7
420,325 + Dshi_0428 0.56 +1.9
420,343 - Dshi_0428 0.57 -0.4
420,361 - Dshi_0428 0.58 -1.0
420,364 - Dshi_0428 0.58 +3.2
420,380 + Dshi_0428 0.59 +0.1
420,395 + Dshi_0428 0.60 -0.9
420,416 + Dshi_0428 0.61 +0.9
420,416 + Dshi_0428 0.61 -1.9
420,416 - Dshi_0428 0.61 +0.3
420,500 - Dshi_0428 0.65 +0.9
420,510 + Dshi_0428 0.66 -0.3
420,515 - Dshi_0428 0.66 -1.1
420,596 + Dshi_0428 0.70 -2.7
420,606 - Dshi_0428 0.71 -2.3
420,606 - Dshi_0428 0.71 +0.5
420,674 - Dshi_0428 0.75 -1.1
420,685 - Dshi_0428 0.75 -2.1
420,686 + Dshi_0428 0.75 -2.3
420,712 - Dshi_0428 0.77 +0.6
420,727 + Dshi_0428 0.77 +2.9
420,734 + Dshi_0428 0.78 -0.4
420,884 + Dshi_0428 0.86 -1.1
420,889 + Dshi_0428 0.86 +0.9
420,938 - Dshi_0428 0.89 -0.9
420,945 + Dshi_0428 0.89 -2.3
420,945 + Dshi_0428 0.89 -0.3
420,953 - Dshi_0428 0.89 -1.7
420,969 + -0.3
421,017 - +0.9
421,019 + -3.5
421,072 - -3.6
421,103 - +1.8
421,133 + -2.7
421,141 - -0.7
421,154 - -1.1
421,188 + -2.1
421,188 + -0.8
421,188 + -0.9
421,232 + +1.3
421,245 - -0.3
421,251 - -2.7
421,251 - -2.0
421,259 - -1.0
421,263 + -2.7
421,271 - +0.9
421,320 + Dshi_0429 0.19 -0.9
421,351 - Dshi_0429 0.30 -0.7
421,355 + Dshi_0429 0.31 +1.6
421,415 - Dshi_0429 0.52 -2.1
421,536 + +0.5
421,555 + -1.9
421,573 + -2.1
421,573 + +0.5
421,581 - -0.9
421,582 + +1.7
421,582 + +2.0
421,590 - -1.3
421,590 - +0.0
421,599 - -0.4
421,600 + -0.2
421,610 - -1.7
421,752 - Dshi_0430 0.41 -0.3
421,796 - Dshi_0430 0.51 -3.0
421,801 - Dshi_0430 0.52 -2.9
421,923 - Dshi_0430 0.80 -0.1
421,956 + Dshi_0430 0.88 -0.7
421,969 - -1.0
422,007 - -2.8
422,007 - -2.7
422,068 + -2.2
422,081 - -1.4
422,081 - -0.1
422,094 + -1.2
422,121 + -1.4
422,129 - -4.3
422,160 - +0.1
422,253 + +1.5
422,266 + +0.9
422,315 + +0.9
422,315 + -3.7
422,323 - -2.3
422,325 + -1.3
422,325 + -0.7
422,328 - +0.7
422,366 + Dshi_0431 0.11 -1.9
422,434 - Dshi_0431 0.15 +0.9
422,464 + Dshi_0431 0.17 -1.9
422,478 + Dshi_0431 0.18 -3.1
422,479 - Dshi_0431 0.18 -0.1
422,517 - Dshi_0431 0.21 +0.5

Or see this region's nucleotide sequence