Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0428

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Chloramphenicol 0.0002 mg/ml
418,377	+				+2.9
418,450	-				-3.8
418,533	-		Dshi_0426	0.12	-2.4
418,562	+		Dshi_0426	0.20	+1.9
418,563	+		Dshi_0426	0.21	-0.7
418,654	+		Dshi_0426	0.46	+0.9
418,661	-		Dshi_0426	0.48	-0.4
418,685	-		Dshi_0426	0.54	-0.8
418,695	-		Dshi_0426	0.57	-0.7
418,714	-		Dshi_0426	0.62	-1.1
418,891	+				-1.9
418,935	+				-1.6
418,940	+				+0.1
418,979	-				-1.1
419,023	+				-2.3
419,031	-		Dshi_0427	0.13	+0.9
419,047	+		Dshi_0427	0.19	-3.1
419,061	+		Dshi_0427	0.25	-1.9
419,078	-		Dshi_0427	0.32	+3.5
419,107	+		Dshi_0427	0.43	+0.2
419,126	+		Dshi_0427	0.51	+0.6
419,169	-		Dshi_0427	0.68	-2.1
419,261	+				+0.9
419,306	+				-1.1
419,334	-				-2.3
419,357	+				-2.4
419,358	-				-1.0
419,528	-		Dshi_0428	0.14	+0.9
419,633	+		Dshi_0428	0.19	-1.4
419,638	+		Dshi_0428	0.20	-3.6
419,643	+		Dshi_0428	0.20	-2.9
419,646	-		Dshi_0428	0.20	-2.6
419,651	+		Dshi_0428	0.20	-1.1
419,760	-		Dshi_0428	0.26	+0.9
419,792	+		Dshi_0428	0.28	-0.7
419,800	-		Dshi_0428	0.28	-0.5
419,814	+		Dshi_0428	0.29	+2.1
419,841	+		Dshi_0428	0.30	-3.6
419,880	+		Dshi_0428	0.32	-2.3
419,961	-		Dshi_0428	0.37	-1.9
420,004	-		Dshi_0428	0.39	-0.2
420,008	-		Dshi_0428	0.39	-0.1
420,008	-		Dshi_0428	0.39	-1.7
420,011	+		Dshi_0428	0.39	+0.2
420,012	-		Dshi_0428	0.39	-3.1
420,087	+		Dshi_0428	0.43	+1.9
420,107	+		Dshi_0428	0.44	+0.3
420,112	+		Dshi_0428	0.45	-1.9
420,198	+		Dshi_0428	0.49	-2.3
420,282	+		Dshi_0428	0.54	+0.1
420,291	+		Dshi_0428	0.54	+0.2
420,300	+		Dshi_0428	0.55	-0.7
420,325	+		Dshi_0428	0.56	+1.9
420,343	-		Dshi_0428	0.57	-0.4
420,361	-		Dshi_0428	0.58	-1.0
420,364	-		Dshi_0428	0.58	+3.2
420,380	+		Dshi_0428	0.59	+0.1
420,395	+		Dshi_0428	0.60	-0.9
420,416	+		Dshi_0428	0.61	+0.9
420,416	+		Dshi_0428	0.61	-1.9
420,416	-		Dshi_0428	0.61	+0.3
420,500	-		Dshi_0428	0.65	+0.9
420,510	+		Dshi_0428	0.66	-0.3
420,515	-		Dshi_0428	0.66	-1.1
420,596	+		Dshi_0428	0.70	-2.7
420,606	-		Dshi_0428	0.71	-2.3
420,606	-		Dshi_0428	0.71	+0.5
420,674	-		Dshi_0428	0.75	-1.1
420,685	-		Dshi_0428	0.75	-2.1
420,686	+		Dshi_0428	0.75	-2.3
420,712	-		Dshi_0428	0.77	+0.6
420,727	+		Dshi_0428	0.77	+2.9
420,734	+		Dshi_0428	0.78	-0.4
420,884	+		Dshi_0428	0.86	-1.1
420,889	+		Dshi_0428	0.86	+0.9
420,938	-		Dshi_0428	0.89	-0.9
420,945	+		Dshi_0428	0.89	-2.3
420,945	+		Dshi_0428	0.89	-0.3
420,953	-		Dshi_0428	0.89	-1.7
420,969	+				-0.3
421,017	-				+0.9
421,019	+				-3.5
421,072	-				-3.6
421,103	-				+1.8
421,133	+				-2.7
421,141	-				-0.7
421,154	-				-1.1
421,188	+				-2.1
421,188	+				-0.8
421,188	+				-0.9
421,232	+				+1.3
421,245	-				-0.3
421,251	-				-2.7
421,251	-				-2.0
421,259	-				-1.0
421,263	+				-2.7
421,271	-				+0.9
421,320	+		Dshi_0429	0.19	-0.9
421,351	-		Dshi_0429	0.30	-0.7
421,355	+		Dshi_0429	0.31	+1.6
421,415	-		Dshi_0429	0.52	-2.1
421,536	+				+0.5
421,555	+				-1.9
421,573	+				-2.1
421,573	+				+0.5
421,581	-				-0.9
421,582	+				+1.7
421,582	+				+2.0
421,590	-				-1.3
421,590	-				+0.0
421,599	-				-0.4
421,600	+				-0.2
421,610	-				-1.7
421,752	-		Dshi_0430	0.41	-0.3
421,796	-		Dshi_0430	0.51	-3.0
421,801	-		Dshi_0430	0.52	-2.9
421,923	-		Dshi_0430	0.80	-0.1
421,956	+		Dshi_0430	0.88	-0.7
421,969	-				-1.0
422,007	-				-2.8
422,007	-				-2.7
422,068	+				-2.2
422,081	-				-1.4
422,081	-				-0.1
422,094	+				-1.2
422,121	+				-1.4
422,129	-				-4.3