Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0423 and Dshi_0424 are separated by 616 nucleotides Dshi_0424 and Dshi_0426 are separated by 921 nucleotides
Dshi_0423: Dshi_0423 - phosphoesterase PA-phosphatase related (RefSeq), at 415,763 to 416,488
_0423
Dshi_0424: Dshi_0424 - peptidase M41 (RefSeq), at 417,105 to 417,566
_0424
Dshi_0426: Dshi_0426 - hypothetical protein (RefSeq), at 418,488 to 418,850
_0426
Position (kb) 417
418 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 416.123 kb on - strand, within Dshi_0423 at 416.219 kb on + strand, within Dshi_0423 at 416.273 kb on - strand, within Dshi_0423 at 416.297 kb on - strand, within Dshi_0423 at 416.309 kb on + strand, within Dshi_0423 at 416.317 kb on - strand, within Dshi_0423 at 416.405 kb on - strand, within Dshi_0423 at 416.425 kb on + strand at 416.427 kb on + strand at 416.433 kb on + strand at 416.505 kb on - strand at 416.512 kb on - strand at 416.530 kb on - strand at 416.557 kb on + strand at 416.562 kb on + strand at 416.565 kb on - strand at 416.629 kb on + strand at 416.631 kb on + strand at 416.668 kb on + strand at 416.675 kb on + strand at 416.676 kb on - strand at 416.701 kb on + strand at 416.785 kb on + strand at 416.786 kb on - strand at 416.832 kb on + strand at 416.843 kb on + strand at 416.851 kb on - strand at 416.853 kb on + strand at 416.853 kb on + strand at 416.853 kb on + strand at 416.861 kb on - strand at 416.861 kb on - strand at 416.861 kb on - strand at 416.880 kb on - strand at 416.882 kb on + strand at 416.922 kb on - strand at 417.005 kb on - strand at 417.012 kb on - strand at 417.014 kb on + strand at 417.027 kb on + strand at 417.037 kb on + strand at 417.045 kb on - strand at 417.045 kb on - strand at 417.052 kb on - strand at 417.059 kb on + strand at 417.128 kb on + strand at 417.183 kb on + strand, within Dshi_0424 at 417.191 kb on - strand, within Dshi_0424 at 417.197 kb on + strand, within Dshi_0424 at 417.212 kb on + strand, within Dshi_0424 at 417.237 kb on + strand, within Dshi_0424 at 417.239 kb on + strand, within Dshi_0424 at 417.251 kb on - strand, within Dshi_0424 at 417.267 kb on + strand, within Dshi_0424 at 417.313 kb on + strand, within Dshi_0424 at 417.346 kb on - strand, within Dshi_0424 at 417.348 kb on - strand, within Dshi_0424 at 417.441 kb on + strand, within Dshi_0424 at 417.441 kb on - strand, within Dshi_0424 at 417.474 kb on + strand, within Dshi_0424 at 417.480 kb on + strand, within Dshi_0424 at 417.572 kb on + strand at 417.572 kb on + strand at 417.578 kb on - strand at 417.580 kb on - strand at 417.632 kb on - strand at 417.701 kb on - strand at 417.816 kb on + strand at 417.824 kb on - strand at 417.829 kb on + strand at 417.837 kb on - strand at 417.856 kb on - strand at 417.864 kb on - strand at 417.936 kb on + strand at 417.958 kb on + strand at 418.075 kb on + strand at 418.083 kb on - strand at 418.090 kb on - strand at 418.103 kb on - strand at 418.139 kb on + strand at 418.158 kb on - strand at 418.225 kb on - strand at 418.263 kb on + strand at 418.377 kb on + strand at 418.450 kb on - strand at 418.533 kb on - strand, within Dshi_0426 at 418.562 kb on + strand, within Dshi_0426 at 418.563 kb on + strand, within Dshi_0426
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 416,123 - Dshi_0423 0.50 -1.0 416,219 + Dshi_0423 0.63 -2.7 416,273 - Dshi_0423 0.70 -1.1 416,297 - Dshi_0423 0.74 -1.4 416,309 + Dshi_0423 0.75 -2.2 416,317 - Dshi_0423 0.76 -1.1 416,405 - Dshi_0423 0.88 -2.9 416,425 + -0.8 416,427 + -1.5 416,433 + +0.9 416,505 - -0.4 416,512 - -0.4 416,530 - -0.9 416,557 + -1.2 416,562 + +0.9 416,565 - +0.1 416,629 + -1.4 416,631 + +0.9 416,668 + -0.6 416,675 + +0.5 416,676 - -1.1 416,701 + -1.0 416,785 + -2.5 416,786 - -2.9 416,832 + -1.1 416,843 + -0.4 416,851 - +1.4 416,853 + -0.3 416,853 + -2.1 416,853 + +1.6 416,861 - -0.5 416,861 - -0.1 416,861 - -3.3 416,880 - +0.9 416,882 + +0.9 416,922 - -0.1 417,005 - -2.2 417,012 - -1.0 417,014 + +2.5 417,027 + -1.4 417,037 + -2.5 417,045 - -0.5 417,045 - -0.4 417,052 - +0.2 417,059 + -3.0 417,128 + -1.1 417,183 + Dshi_0424 0.17 -1.0 417,191 - Dshi_0424 0.19 -1.0 417,197 + Dshi_0424 0.20 -1.1 417,212 + Dshi_0424 0.23 +1.9 417,237 + Dshi_0424 0.29 -2.3 417,239 + Dshi_0424 0.29 +2.9 417,251 - Dshi_0424 0.32 -0.3 417,267 + Dshi_0424 0.35 -1.9 417,313 + Dshi_0424 0.45 -0.1 417,346 - Dshi_0424 0.52 -0.3 417,348 - Dshi_0424 0.53 -0.6 417,441 + Dshi_0424 0.73 +0.4 417,441 - Dshi_0424 0.73 +0.9 417,474 + Dshi_0424 0.80 -1.4 417,480 + Dshi_0424 0.81 -0.4 417,572 + -0.1 417,572 + +0.9 417,578 - +0.9 417,580 - +1.6 417,632 - -2.4 417,701 - -0.5 417,816 + -1.9 417,824 - -2.4 417,829 + -1.8 417,837 - -2.1 417,856 - -1.4 417,864 - -0.1 417,936 + -2.9 417,958 + -0.5 418,075 + -1.9 418,083 - -2.9 418,090 - -1.9 418,103 - -3.0 418,139 + -0.7 418,158 - -3.1 418,225 - +0.9 418,263 + +0.9 418,377 + +2.9 418,450 - -3.8 418,533 - Dshi_0426 0.12 -2.4 418,562 + Dshi_0426 0.20 +1.9 418,563 + Dshi_0426 0.21 -0.7
Or see this region's nucleotide sequence