Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0421 and Dshi_0422 are separated by 184 nucleotides Dshi_0422 and Dshi_0423 are separated by 77 nucleotides Dshi_0423 and Dshi_0424 are separated by 616 nucleotides
Dshi_0421: Dshi_0421 - phospholipase D/Transphosphatidylase (RefSeq), at 413,435 to 414,979
_0421
Dshi_0422: Dshi_0422 - Propeptide PepSY amd peptidase M4 (RefSeq), at 415,164 to 415,685
_0422
Dshi_0423: Dshi_0423 - phosphoesterase PA-phosphatase related (RefSeq), at 415,763 to 416,488
_0423
Dshi_0424: Dshi_0424 - peptidase M41 (RefSeq), at 417,105 to 417,566
_0424
Position (kb) 415
416
417 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 414.766 kb on + strand, within Dshi_0421 at 414.799 kb on + strand, within Dshi_0421 at 414.802 kb on - strand, within Dshi_0421 at 414.813 kb on + strand, within Dshi_0421 at 414.925 kb on - strand at 414.930 kb on - strand at 414.951 kb on + strand at 414.988 kb on + strand at 414.996 kb on - strand at 415.015 kb on - strand at 415.030 kb on - strand at 415.045 kb on + strand at 415.055 kb on + strand at 415.063 kb on - strand at 415.135 kb on + strand at 415.140 kb on + strand at 415.238 kb on - strand, within Dshi_0422 at 415.298 kb on + strand, within Dshi_0422 at 415.340 kb on - strand, within Dshi_0422 at 415.346 kb on + strand, within Dshi_0422 at 415.408 kb on + strand, within Dshi_0422 at 415.408 kb on + strand, within Dshi_0422 at 415.408 kb on + strand, within Dshi_0422 at 415.408 kb on + strand, within Dshi_0422 at 415.408 kb on + strand, within Dshi_0422 at 415.408 kb on + strand, within Dshi_0422 at 415.416 kb on - strand, within Dshi_0422 at 415.416 kb on - strand, within Dshi_0422 at 415.416 kb on - strand, within Dshi_0422 at 415.416 kb on - strand, within Dshi_0422 at 415.416 kb on - strand, within Dshi_0422 at 415.418 kb on + strand, within Dshi_0422 at 415.433 kb on - strand, within Dshi_0422 at 415.439 kb on - strand, within Dshi_0422 at 415.448 kb on + strand, within Dshi_0422 at 415.453 kb on + strand, within Dshi_0422 at 415.504 kb on + strand, within Dshi_0422 at 415.516 kb on - strand, within Dshi_0422 at 415.519 kb on + strand, within Dshi_0422 at 415.538 kb on - strand, within Dshi_0422 at 415.592 kb on + strand, within Dshi_0422 at 415.646 kb on + strand at 415.747 kb on - strand at 415.759 kb on + strand at 415.759 kb on + strand at 415.759 kb on + strand at 415.759 kb on + strand at 415.767 kb on - strand at 415.767 kb on - strand at 415.775 kb on - strand at 415.984 kb on - strand, within Dshi_0423 at 415.984 kb on - strand, within Dshi_0423 at 415.986 kb on - strand, within Dshi_0423 at 416.006 kb on - strand, within Dshi_0423 at 416.008 kb on + strand, within Dshi_0423 at 416.015 kb on + strand, within Dshi_0423 at 416.063 kb on + strand, within Dshi_0423 at 416.063 kb on + strand, within Dshi_0423 at 416.071 kb on - strand, within Dshi_0423 at 416.071 kb on - strand, within Dshi_0423 at 416.088 kb on + strand, within Dshi_0423 at 416.088 kb on + strand, within Dshi_0423 at 416.123 kb on - strand, within Dshi_0423 at 416.219 kb on + strand, within Dshi_0423 at 416.273 kb on - strand, within Dshi_0423 at 416.297 kb on - strand, within Dshi_0423 at 416.309 kb on + strand, within Dshi_0423 at 416.317 kb on - strand, within Dshi_0423 at 416.405 kb on - strand, within Dshi_0423 at 416.425 kb on + strand at 416.427 kb on + strand at 416.433 kb on + strand at 416.505 kb on - strand at 416.512 kb on - strand at 416.530 kb on - strand at 416.557 kb on + strand at 416.562 kb on + strand at 416.565 kb on - strand at 416.629 kb on + strand at 416.631 kb on + strand at 416.668 kb on + strand at 416.675 kb on + strand at 416.676 kb on - strand at 416.701 kb on + strand at 416.785 kb on + strand at 416.786 kb on - strand at 416.832 kb on + strand at 416.843 kb on + strand at 416.851 kb on - strand at 416.853 kb on + strand at 416.853 kb on + strand at 416.853 kb on + strand at 416.861 kb on - strand at 416.861 kb on - strand at 416.861 kb on - strand at 416.880 kb on - strand at 416.882 kb on + strand at 416.922 kb on - strand at 417.005 kb on - strand at 417.012 kb on - strand at 417.014 kb on + strand at 417.027 kb on + strand at 417.037 kb on + strand at 417.045 kb on - strand at 417.045 kb on - strand at 417.052 kb on - strand at 417.059 kb on + strand at 417.128 kb on + strand at 417.183 kb on + strand, within Dshi_0424 at 417.191 kb on - strand, within Dshi_0424 at 417.197 kb on + strand, within Dshi_0424 at 417.212 kb on + strand, within Dshi_0424 at 417.237 kb on + strand, within Dshi_0424 at 417.239 kb on + strand, within Dshi_0424 at 417.251 kb on - strand, within Dshi_0424 at 417.267 kb on + strand, within Dshi_0424 at 417.313 kb on + strand, within Dshi_0424 at 417.346 kb on - strand, within Dshi_0424 at 417.348 kb on - strand, within Dshi_0424 at 417.441 kb on + strand, within Dshi_0424 at 417.441 kb on - strand, within Dshi_0424 at 417.474 kb on + strand, within Dshi_0424 at 417.480 kb on + strand, within Dshi_0424
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 414,766 + Dshi_0421 0.86 -1.1 414,799 + Dshi_0421 0.88 -1.1 414,802 - Dshi_0421 0.88 -0.4 414,813 + Dshi_0421 0.89 +0.9 414,925 - -1.9 414,930 - -2.6 414,951 + -3.8 414,988 + -2.1 414,996 - -0.8 415,015 - -2.2 415,030 - -0.9 415,045 + -1.1 415,055 + +0.9 415,063 - +0.9 415,135 + -1.4 415,140 + +1.8 415,238 - Dshi_0422 0.14 -3.0 415,298 + Dshi_0422 0.26 -2.1 415,340 - Dshi_0422 0.34 -1.5 415,346 + Dshi_0422 0.35 -0.8 415,408 + Dshi_0422 0.47 -2.8 415,408 + Dshi_0422 0.47 +0.0 415,408 + Dshi_0422 0.47 -2.5 415,408 + Dshi_0422 0.47 -0.6 415,408 + Dshi_0422 0.47 +0.6 415,408 + Dshi_0422 0.47 -1.9 415,416 - Dshi_0422 0.48 +1.9 415,416 - Dshi_0422 0.48 -1.7 415,416 - Dshi_0422 0.48 -1.5 415,416 - Dshi_0422 0.48 -0.1 415,416 - Dshi_0422 0.48 +0.4 415,418 + Dshi_0422 0.49 -1.5 415,433 - Dshi_0422 0.52 -1.6 415,439 - Dshi_0422 0.53 +0.9 415,448 + Dshi_0422 0.54 +0.7 415,453 + Dshi_0422 0.55 +0.1 415,504 + Dshi_0422 0.65 -0.1 415,516 - Dshi_0422 0.67 +3.1 415,519 + Dshi_0422 0.68 -0.3 415,538 - Dshi_0422 0.72 -1.3 415,592 + Dshi_0422 0.82 +1.7 415,646 + -1.2 415,747 - -2.8 415,759 + -2.8 415,759 + -1.1 415,759 + -1.1 415,759 + +0.4 415,767 - +0.9 415,767 - -2.3 415,775 - -0.3 415,984 - Dshi_0423 0.30 -1.9 415,984 - Dshi_0423 0.30 -0.4 415,986 - Dshi_0423 0.31 -0.1 416,006 - Dshi_0423 0.33 -0.6 416,008 + Dshi_0423 0.34 -1.2 416,015 + Dshi_0423 0.35 -1.1 416,063 + Dshi_0423 0.41 +0.9 416,063 + Dshi_0423 0.41 -1.0 416,071 - Dshi_0423 0.42 -2.9 416,071 - Dshi_0423 0.42 +0.9 416,088 + Dshi_0423 0.45 +1.7 416,088 + Dshi_0423 0.45 -0.6 416,123 - Dshi_0423 0.50 -1.0 416,219 + Dshi_0423 0.63 -2.7 416,273 - Dshi_0423 0.70 -1.1 416,297 - Dshi_0423 0.74 -1.4 416,309 + Dshi_0423 0.75 -2.2 416,317 - Dshi_0423 0.76 -1.1 416,405 - Dshi_0423 0.88 -2.9 416,425 + -0.8 416,427 + -1.5 416,433 + +0.9 416,505 - -0.4 416,512 - -0.4 416,530 - -0.9 416,557 + -1.2 416,562 + +0.9 416,565 - +0.1 416,629 + -1.4 416,631 + +0.9 416,668 + -0.6 416,675 + +0.5 416,676 - -1.1 416,701 + -1.0 416,785 + -2.5 416,786 - -2.9 416,832 + -1.1 416,843 + -0.4 416,851 - +1.4 416,853 + -0.3 416,853 + -2.1 416,853 + +1.6 416,861 - -0.5 416,861 - -0.1 416,861 - -3.3 416,880 - +0.9 416,882 + +0.9 416,922 - -0.1 417,005 - -2.2 417,012 - -1.0 417,014 + +2.5 417,027 + -1.4 417,037 + -2.5 417,045 - -0.5 417,045 - -0.4 417,052 - +0.2 417,059 + -3.0 417,128 + -1.1 417,183 + Dshi_0424 0.17 -1.0 417,191 - Dshi_0424 0.19 -1.0 417,197 + Dshi_0424 0.20 -1.1 417,212 + Dshi_0424 0.23 +1.9 417,237 + Dshi_0424 0.29 -2.3 417,239 + Dshi_0424 0.29 +2.9 417,251 - Dshi_0424 0.32 -0.3 417,267 + Dshi_0424 0.35 -1.9 417,313 + Dshi_0424 0.45 -0.1 417,346 - Dshi_0424 0.52 -0.3 417,348 - Dshi_0424 0.53 -0.6 417,441 + Dshi_0424 0.73 +0.4 417,441 - Dshi_0424 0.73 +0.9 417,474 + Dshi_0424 0.80 -1.4 417,480 + Dshi_0424 0.81 -0.4
Or see this region's nucleotide sequence