Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0365 and Dshi_0366 are separated by 6 nucleotides Dshi_0366 and Dshi_0367 are separated by 207 nucleotides Dshi_0367 and Dshi_0368 overlap by 4 nucleotides Dshi_0368 and Dshi_0369 are separated by 17 nucleotides
Dshi_0365: Dshi_0365 - anti-ECFsigma factor, ChrR (RefSeq), at 349,194 to 349,865
_0365
Dshi_0366: Dshi_0366 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 349,872 to 350,441
_0366
Dshi_0367: Dshi_0367 - amine oxidase (RefSeq), at 350,649 to 351,953
_0367
Dshi_0368: Dshi_0368 - protein of unknown function DUF1365 (RefSeq), at 351,950 to 352,708
_0368
Dshi_0369: Dshi_0369 - sodium:galactoside symporter family protein, putative (RefSeq), at 352,726 to 353,964
_0369
Position (kb) 350
351
352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 349.912 kb on - strand at 349.946 kb on - strand, within Dshi_0366 at 350.079 kb on + strand, within Dshi_0366 at 350.082 kb on - strand, within Dshi_0366 at 350.305 kb on + strand, within Dshi_0366 at 350.313 kb on - strand, within Dshi_0366 at 350.313 kb on - strand, within Dshi_0366 at 350.376 kb on - strand, within Dshi_0366 at 350.391 kb on - strand at 350.446 kb on + strand at 350.492 kb on + strand at 350.532 kb on + strand at 350.555 kb on - strand at 350.561 kb on - strand at 350.575 kb on + strand at 350.607 kb on - strand at 350.617 kb on - strand at 350.627 kb on - strand at 350.629 kb on + strand at 350.637 kb on - strand at 350.637 kb on - strand at 350.644 kb on + strand at 350.676 kb on - strand at 350.721 kb on - strand at 350.823 kb on - strand, within Dshi_0367 at 350.866 kb on + strand, within Dshi_0367 at 350.866 kb on + strand, within Dshi_0367 at 350.990 kb on - strand, within Dshi_0367 at 351.006 kb on - strand, within Dshi_0367 at 351.064 kb on + strand, within Dshi_0367 at 351.066 kb on + strand, within Dshi_0367 at 351.113 kb on - strand, within Dshi_0367 at 351.227 kb on - strand, within Dshi_0367 at 351.256 kb on + strand, within Dshi_0367 at 351.269 kb on + strand, within Dshi_0367 at 351.348 kb on - strand, within Dshi_0367 at 351.462 kb on + strand, within Dshi_0367 at 351.522 kb on + strand, within Dshi_0367 at 351.526 kb on + strand, within Dshi_0367 at 351.554 kb on - strand, within Dshi_0367 at 351.560 kb on + strand, within Dshi_0367 at 351.587 kb on + strand, within Dshi_0367 at 351.587 kb on + strand, within Dshi_0367 at 351.595 kb on - strand, within Dshi_0367 at 351.595 kb on - strand, within Dshi_0367 at 351.597 kb on + strand, within Dshi_0367 at 351.597 kb on + strand, within Dshi_0367 at 351.642 kb on + strand, within Dshi_0367 at 351.712 kb on - strand, within Dshi_0367 at 351.768 kb on + strand, within Dshi_0367 at 351.876 kb on + strand at 351.884 kb on - strand at 351.894 kb on - strand at 351.992 kb on + strand at 352.139 kb on + strand, within Dshi_0368 at 352.263 kb on + strand, within Dshi_0368 at 352.271 kb on - strand, within Dshi_0368 at 352.400 kb on - strand, within Dshi_0368 at 352.454 kb on - strand, within Dshi_0368 at 352.454 kb on - strand, within Dshi_0368 at 352.509 kb on - strand, within Dshi_0368 at 352.570 kb on + strand, within Dshi_0368 at 352.653 kb on - strand at 352.674 kb on + strand at 352.706 kb on - strand at 352.833 kb on + strand at 352.833 kb on + strand at 352.835 kb on + strand at 352.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 349,912 - +1.1 349,946 - Dshi_0366 0.13 +1.1 350,079 + Dshi_0366 0.36 -2.0 350,082 - Dshi_0366 0.37 -1.9 350,305 + Dshi_0366 0.76 -0.9 350,313 - Dshi_0366 0.77 +1.1 350,313 - Dshi_0366 0.77 -0.9 350,376 - Dshi_0366 0.88 +1.0 350,391 - +1.1 350,446 + -2.0 350,492 + +0.6 350,532 + +0.1 350,555 - -2.2 350,561 - +2.7 350,575 + +0.6 350,607 - +0.4 350,617 - +0.1 350,627 - -0.9 350,629 + -1.5 350,637 - +0.8 350,637 - -2.2 350,644 + -2.3 350,676 - +3.5 350,721 - +0.3 350,823 - Dshi_0367 0.13 +0.1 350,866 + Dshi_0367 0.17 -1.1 350,866 + Dshi_0367 0.17 +3.1 350,990 - Dshi_0367 0.26 +1.1 351,006 - Dshi_0367 0.27 +1.1 351,064 + Dshi_0367 0.32 -0.9 351,066 + Dshi_0367 0.32 +0.1 351,113 - Dshi_0367 0.36 -0.2 351,227 - Dshi_0367 0.44 -3.2 351,256 + Dshi_0367 0.47 -2.5 351,269 + Dshi_0367 0.48 +0.5 351,348 - Dshi_0367 0.54 -1.2 351,462 + Dshi_0367 0.62 +1.1 351,522 + Dshi_0367 0.67 -0.6 351,526 + Dshi_0367 0.67 -1.2 351,554 - Dshi_0367 0.69 -2.6 351,560 + Dshi_0367 0.70 +2.7 351,587 + Dshi_0367 0.72 -1.9 351,587 + Dshi_0367 0.72 +1.1 351,595 - Dshi_0367 0.72 -1.6 351,595 - Dshi_0367 0.72 -2.2 351,597 + Dshi_0367 0.73 +1.1 351,597 + Dshi_0367 0.73 -0.1 351,642 + Dshi_0367 0.76 +0.1 351,712 - Dshi_0367 0.81 -0.5 351,768 + Dshi_0367 0.86 -1.5 351,876 + -1.9 351,884 - -2.0 351,894 - -0.8 351,992 + +1.1 352,139 + Dshi_0368 0.25 +0.5 352,263 + Dshi_0368 0.41 -2.5 352,271 - Dshi_0368 0.42 -0.7 352,400 - Dshi_0368 0.59 +0.6 352,454 - Dshi_0368 0.66 -1.8 352,454 - Dshi_0368 0.66 +0.4 352,509 - Dshi_0368 0.74 +0.1 352,570 + Dshi_0368 0.82 -2.6 352,653 - -1.7 352,674 + +0.5 352,706 - -3.0 352,833 + +0.9 352,833 + +1.5 352,835 + +2.7 352,849 - +3.7
Or see this region's nucleotide sequence