Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0364 and Dshi_0365 are separated by 25 nucleotides Dshi_0365 and Dshi_0366 are separated by 6 nucleotides Dshi_0366 and Dshi_0367 are separated by 207 nucleotides
Dshi_0364: Dshi_0364 - protein of unknown function DUF195 (RefSeq), at 347,936 to 349,168
_0364
Dshi_0365: Dshi_0365 - anti-ECFsigma factor, ChrR (RefSeq), at 349,194 to 349,865
_0365
Dshi_0366: Dshi_0366 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 349,872 to 350,441
_0366
Dshi_0367: Dshi_0367 - amine oxidase (RefSeq), at 350,649 to 351,953
_0367
Position (kb) 349
350
351 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 348.884 kb on - strand, within Dshi_0364 at 348.940 kb on + strand, within Dshi_0364 at 349.123 kb on + strand at 349.190 kb on + strand at 349.281 kb on - strand, within Dshi_0365 at 349.281 kb on - strand, within Dshi_0365 at 349.912 kb on - strand at 349.946 kb on - strand, within Dshi_0366 at 350.079 kb on + strand, within Dshi_0366 at 350.082 kb on - strand, within Dshi_0366 at 350.305 kb on + strand, within Dshi_0366 at 350.313 kb on - strand, within Dshi_0366 at 350.313 kb on - strand, within Dshi_0366 at 350.376 kb on - strand, within Dshi_0366 at 350.391 kb on - strand at 350.446 kb on + strand at 350.492 kb on + strand at 350.532 kb on + strand at 350.555 kb on - strand at 350.561 kb on - strand at 350.575 kb on + strand at 350.607 kb on - strand at 350.617 kb on - strand at 350.627 kb on - strand at 350.629 kb on + strand at 350.637 kb on - strand at 350.637 kb on - strand at 350.644 kb on + strand at 350.676 kb on - strand at 350.721 kb on - strand at 350.823 kb on - strand, within Dshi_0367 at 350.866 kb on + strand, within Dshi_0367 at 350.866 kb on + strand, within Dshi_0367 at 350.990 kb on - strand, within Dshi_0367 at 351.006 kb on - strand, within Dshi_0367 at 351.064 kb on + strand, within Dshi_0367 at 351.066 kb on + strand, within Dshi_0367 at 351.113 kb on - strand, within Dshi_0367 at 351.227 kb on - strand, within Dshi_0367 at 351.256 kb on + strand, within Dshi_0367 at 351.269 kb on + strand, within Dshi_0367 at 351.348 kb on - strand, within Dshi_0367
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 348,884 - Dshi_0364 0.77 +3.7 348,940 + Dshi_0364 0.81 +1.5 349,123 + -0.5 349,190 + -0.9 349,281 - Dshi_0365 0.13 -0.5 349,281 - Dshi_0365 0.13 +1.1 349,912 - +1.1 349,946 - Dshi_0366 0.13 +1.1 350,079 + Dshi_0366 0.36 -2.0 350,082 - Dshi_0366 0.37 -1.9 350,305 + Dshi_0366 0.76 -0.9 350,313 - Dshi_0366 0.77 +1.1 350,313 - Dshi_0366 0.77 -0.9 350,376 - Dshi_0366 0.88 +1.0 350,391 - +1.1 350,446 + -2.0 350,492 + +0.6 350,532 + +0.1 350,555 - -2.2 350,561 - +2.7 350,575 + +0.6 350,607 - +0.4 350,617 - +0.1 350,627 - -0.9 350,629 + -1.5 350,637 - +0.8 350,637 - -2.2 350,644 + -2.3 350,676 - +3.5 350,721 - +0.3 350,823 - Dshi_0367 0.13 +0.1 350,866 + Dshi_0367 0.17 -1.1 350,866 + Dshi_0367 0.17 +3.1 350,990 - Dshi_0367 0.26 +1.1 351,006 - Dshi_0367 0.27 +1.1 351,064 + Dshi_0367 0.32 -0.9 351,066 + Dshi_0367 0.32 +0.1 351,113 - Dshi_0367 0.36 -0.2 351,227 - Dshi_0367 0.44 -3.2 351,256 + Dshi_0367 0.47 -2.5 351,269 + Dshi_0367 0.48 +0.5 351,348 - Dshi_0367 0.54 -1.2
Or see this region's nucleotide sequence