Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0272

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0270 and Dshi_0271 are separated by 281 nucleotidesDshi_0271 and Dshi_0272 are separated by 12 nucleotidesDshi_0272 and Dshi_0273 are separated by 25 nucleotides Dshi_0270: Dshi_0270 - protein of unknown function DUF6 transmembrane (RefSeq), at 273,419 to 274,324 _0270 Dshi_0271: Dshi_0271 - ribosomal protein S12 (RefSeq), at 274,606 to 274,977 _0271 Dshi_0272: Dshi_0272 - ribosomal protein S7 (RefSeq), at 274,990 to 275,460 _0272 Dshi_0273: Dshi_0273 - translation elongation factor G (RefSeq), at 275,486 to 277,603 _0273 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1 2at 274.022 kb on - strand, within Dshi_0270at 274.022 kb on - strand, within Dshi_0270at 274.180 kb on + strand, within Dshi_0270at 274.180 kb on + strand, within Dshi_0270at 274.237 kb on - strandat 274.278 kb on - strandat 274.362 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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274,022 - Dshi_0270 0.67 -2.4
274,022 - Dshi_0270 0.67 +1.0
274,180 + Dshi_0270 0.84 +1.2
274,180 + Dshi_0270 0.84 +0.0
274,237 - -1.4
274,278 - +1.8
274,362 + -1.1

Or see this region's nucleotide sequence