Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0262 and Dshi_0263 are separated by 127 nucleotides Dshi_0263 and Dshi_0264 are separated by 54 nucleotides
Dshi_0262: Dshi_0262 - hypothetical protein (RefSeq), at 258,788 to 259,516
_0262
Dshi_0263: Dshi_0263 - methyltransferase FkbM family (RefSeq), at 259,644 to 260,429
_0263
Dshi_0264: Dshi_0264 - hypothetical protein (RefSeq), at 260,484 to 261,542
_0264
Position (kb) 259
260
261 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 258.658 kb on - strand at 258.663 kb on + strand at 258.715 kb on - strand at 258.811 kb on + strand at 258.822 kb on + strand at 258.827 kb on + strand at 258.827 kb on + strand at 258.828 kb on + strand at 258.835 kb on - strand at 258.869 kb on + strand, within Dshi_0262 at 259.039 kb on + strand, within Dshi_0262 at 259.173 kb on + strand, within Dshi_0262 at 259.217 kb on + strand, within Dshi_0262 at 259.276 kb on + strand, within Dshi_0262 at 259.318 kb on - strand, within Dshi_0262 at 259.667 kb on + strand at 259.675 kb on - strand at 259.687 kb on + strand at 259.756 kb on - strand, within Dshi_0263 at 259.760 kb on + strand, within Dshi_0263 at 259.860 kb on - strand, within Dshi_0263 at 259.975 kb on + strand, within Dshi_0263 at 259.983 kb on - strand, within Dshi_0263 at 260.051 kb on + strand, within Dshi_0263 at 260.059 kb on - strand, within Dshi_0263 at 260.059 kb on - strand, within Dshi_0263 at 260.065 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.094 kb on - strand, within Dshi_0263 at 260.181 kb on + strand, within Dshi_0263 at 260.234 kb on + strand, within Dshi_0263 at 260.278 kb on + strand, within Dshi_0263 at 260.280 kb on - strand, within Dshi_0263 at 260.306 kb on + strand, within Dshi_0263 at 260.329 kb on - strand, within Dshi_0263 at 260.350 kb on + strand, within Dshi_0263 at 260.356 kb on - strand at 260.394 kb on + strand at 260.404 kb on - strand at 260.460 kb on - strand at 260.468 kb on + strand at 260.468 kb on + strand at 260.476 kb on - strand at 260.476 kb on - strand at 260.560 kb on + strand at 260.597 kb on + strand, within Dshi_0264 at 260.667 kb on - strand, within Dshi_0264 at 260.717 kb on + strand, within Dshi_0264 at 260.725 kb on - strand, within Dshi_0264 at 260.735 kb on - strand, within Dshi_0264 at 260.744 kb on + strand, within Dshi_0264 at 260.831 kb on - strand, within Dshi_0264 at 260.913 kb on + strand, within Dshi_0264 at 261.072 kb on + strand, within Dshi_0264 at 261.091 kb on - strand, within Dshi_0264 at 261.287 kb on + strand, within Dshi_0264 at 261.300 kb on + strand, within Dshi_0264 at 261.374 kb on - strand, within Dshi_0264 at 261.376 kb on + strand, within Dshi_0264 at 261.386 kb on + strand, within Dshi_0264 at 261.394 kb on - strand, within Dshi_0264
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 258,658 - -2.4 258,663 + +3.2 258,715 - -0.9 258,811 + -1.2 258,822 + -0.9 258,827 + -0.4 258,827 + -2.6 258,828 + -0.4 258,835 - +1.2 258,869 + Dshi_0262 0.11 -4.1 259,039 + Dshi_0262 0.34 +1.2 259,173 + Dshi_0262 0.53 -1.5 259,217 + Dshi_0262 0.59 +1.2 259,276 + Dshi_0262 0.67 -1.7 259,318 - Dshi_0262 0.73 +1.7 259,667 + +0.5 259,675 - +0.2 259,687 + +1.2 259,756 - Dshi_0263 0.14 -0.1 259,760 + Dshi_0263 0.15 +0.9 259,860 - Dshi_0263 0.27 -1.6 259,975 + Dshi_0263 0.42 +1.2 259,983 - Dshi_0263 0.43 -3.7 260,051 + Dshi_0263 0.52 -1.1 260,059 - Dshi_0263 0.53 +1.6 260,059 - Dshi_0263 0.53 -1.7 260,065 + Dshi_0263 0.54 +1.1 260,086 + Dshi_0263 0.56 -0.4 260,086 + Dshi_0263 0.56 +0.4 260,086 + Dshi_0263 0.56 +0.4 260,094 - Dshi_0263 0.57 +0.6 260,181 + Dshi_0263 0.68 -1.5 260,234 + Dshi_0263 0.75 -3.7 260,278 + Dshi_0263 0.81 -0.1 260,280 - Dshi_0263 0.81 +0.0 260,306 + Dshi_0263 0.84 -0.3 260,329 - Dshi_0263 0.87 -1.6 260,350 + Dshi_0263 0.90 -0.8 260,356 - -2.0 260,394 + +2.2 260,404 - +2.0 260,460 - -2.3 260,468 + -2.5 260,468 + -1.4 260,476 - -1.1 260,476 - -0.9 260,560 + -0.8 260,597 + Dshi_0264 0.11 +1.2 260,667 - Dshi_0264 0.17 +0.1 260,717 + Dshi_0264 0.22 +3.2 260,725 - Dshi_0264 0.23 +3.2 260,735 - Dshi_0264 0.24 -0.1 260,744 + Dshi_0264 0.25 +2.8 260,831 - Dshi_0264 0.33 -0.3 260,913 + Dshi_0264 0.41 +0.2 261,072 + Dshi_0264 0.56 +0.6 261,091 - Dshi_0264 0.57 +0.1 261,287 + Dshi_0264 0.76 +0.5 261,300 + Dshi_0264 0.77 -1.1 261,374 - Dshi_0264 0.84 +0.1 261,376 + Dshi_0264 0.84 +1.0 261,386 + Dshi_0264 0.85 +1.5 261,394 - Dshi_0264 0.86 +0.2
Or see this region's nucleotide sequence