Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0214 and Dshi_0215 are separated by 160 nucleotides Dshi_0215 and Dshi_0216 are separated by 66 nucleotides Dshi_0216 and Dshi_0217 overlap by 1 nucleotides
Dshi_0214: Dshi_0214 - 3-hydroxybutyryl-CoA dehydrogenase (RefSeq), at 212,131 to 213,006
_0214
Dshi_0215: Dshi_0215 - hypothetical protein (RefSeq), at 213,167 to 214,024
_0215
Dshi_0216: Dshi_0216 - Electron transfer flavoprotein alpha subunit (RefSeq), at 214,091 to 215,017
_0216
Dshi_0217: Dshi_0217 - Electron transfer flavoprotein alpha/beta-subunit (RefSeq), at 215,017 to 215,775
_0217
Position (kb) 213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 212.388 kb on - strand, within Dshi_0214 at 212.416 kb on + strand, within Dshi_0214 at 212.602 kb on - strand, within Dshi_0214 at 212.767 kb on - strand, within Dshi_0214 at 212.778 kb on + strand, within Dshi_0214 at 212.778 kb on + strand, within Dshi_0214 at 212.886 kb on + strand, within Dshi_0214 at 212.894 kb on - strand, within Dshi_0214 at 212.920 kb on - strand at 212.922 kb on + strand at 212.929 kb on + strand at 212.929 kb on + strand at 212.929 kb on + strand at 213.003 kb on - strand at 213.012 kb on + strand at 213.013 kb on + strand at 213.020 kb on - strand at 213.034 kb on + strand at 213.035 kb on + strand at 213.135 kb on + strand at 213.179 kb on + strand at 213.187 kb on - strand at 213.246 kb on - strand at 213.254 kb on - strand, within Dshi_0215 at 213.259 kb on - strand, within Dshi_0215 at 213.268 kb on - strand, within Dshi_0215 at 213.272 kb on + strand, within Dshi_0215 at 213.344 kb on - strand, within Dshi_0215 at 213.346 kb on + strand, within Dshi_0215 at 213.353 kb on + strand, within Dshi_0215 at 213.361 kb on - strand, within Dshi_0215 at 213.413 kb on - strand, within Dshi_0215 at 213.449 kb on - strand, within Dshi_0215 at 213.535 kb on - strand, within Dshi_0215 at 213.561 kb on + strand, within Dshi_0215 at 213.684 kb on - strand, within Dshi_0215 at 213.696 kb on + strand, within Dshi_0215 at 213.978 kb on + strand at 214.012 kb on - strand at 214.032 kb on - strand at 214.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 212,388 - Dshi_0214 0.29 -1.6 212,416 + Dshi_0214 0.33 +3.4 212,602 - Dshi_0214 0.54 -0.4 212,767 - Dshi_0214 0.73 -1.8 212,778 + Dshi_0214 0.74 +0.5 212,778 + Dshi_0214 0.74 +1.4 212,886 + Dshi_0214 0.86 -2.4 212,894 - Dshi_0214 0.87 -1.2 212,920 - +1.2 212,922 + -1.3 212,929 + +1.5 212,929 + -2.8 212,929 + -0.8 213,003 - -1.3 213,012 + -2.3 213,013 + -1.4 213,020 - +0.2 213,034 + +1.0 213,035 + -0.7 213,135 + -3.5 213,179 + -1.1 213,187 - +0.5 213,246 - +1.2 213,254 - Dshi_0215 0.10 +0.9 213,259 - Dshi_0215 0.11 -0.7 213,268 - Dshi_0215 0.12 -1.1 213,272 + Dshi_0215 0.12 -2.4 213,344 - Dshi_0215 0.21 -3.2 213,346 + Dshi_0215 0.21 -2.9 213,353 + Dshi_0215 0.22 -3.4 213,361 - Dshi_0215 0.23 -0.8 213,413 - Dshi_0215 0.29 -3.2 213,449 - Dshi_0215 0.33 -1.0 213,535 - Dshi_0215 0.43 -1.6 213,561 + Dshi_0215 0.46 -1.2 213,684 - Dshi_0215 0.60 -0.7 213,696 + Dshi_0215 0.62 -0.3 213,978 + -0.2 214,012 - -0.7 214,032 - +0.2 214,073 - -0.2
Or see this region's nucleotide sequence