Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0204

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0202 and Dshi_0203 are separated by 68 nucleotidesDshi_0203 and Dshi_0204 are separated by 61 nucleotidesDshi_0204 and Dshi_0205 are separated by 275 nucleotides Dshi_0202: Dshi_0202 - protein of unknown function DUF1491 (RefSeq), at 200,713 to 201,045 _0202 Dshi_0203: Dshi_0203 - DNA repair protein RecO (RefSeq), at 201,114 to 201,839 _0203 Dshi_0204: Dshi_0204 - acyl-CoA dehydrogenase domain protein (RefSeq), at 201,901 to 203,595 _0204 Dshi_0205: Dshi_0205 - protein of unknown function DUF81 (RefSeq), at 203,871 to 204,635 _0205 Position (kb) 201 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 200.992 kb on + strand, within Dshi_0202at 201.059 kb on - strandat 201.132 kb on - strandat 201.194 kb on - strand, within Dshi_0203at 201.715 kb on + strand, within Dshi_0203at 201.875 kb on + strandat 202.055 kb on + strandat 202.055 kb on + strandat 202.123 kb on - strand, within Dshi_0204at 202.301 kb on - strand, within Dshi_0204at 202.312 kb on - strand, within Dshi_0204at 202.382 kb on + strand, within Dshi_0204at 202.467 kb on - strand, within Dshi_0204at 202.527 kb on + strand, within Dshi_0204at 202.550 kb on + strand, within Dshi_0204at 202.577 kb on - strand, within Dshi_0204at 202.590 kb on - strand, within Dshi_0204at 202.642 kb on + strand, within Dshi_0204at 202.657 kb on + strand, within Dshi_0204at 202.685 kb on + strand, within Dshi_0204at 202.871 kb on + strand, within Dshi_0204at 202.871 kb on + strand, within Dshi_0204at 202.879 kb on - strand, within Dshi_0204at 202.896 kb on + strand, within Dshi_0204at 203.144 kb on + strand, within Dshi_0204at 203.260 kb on - strand, within Dshi_0204at 203.735 kb on - strandat 203.991 kb on - strand, within Dshi_0205at 204.028 kb on + strand, within Dshi_0205at 204.160 kb on + strand, within Dshi_0205at 204.383 kb on + strand, within Dshi_0205at 204.480 kb on - strand, within Dshi_0205

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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200,992 + Dshi_0202 0.84 +3.5
201,059 - +3.2
201,132 - +1.9
201,194 - Dshi_0203 0.11 -1.2
201,715 + Dshi_0203 0.83 +0.0
201,875 + +1.8
202,055 + +1.2
202,055 + -0.8
202,123 - Dshi_0204 0.13 +1.2
202,301 - Dshi_0204 0.24 -0.8
202,312 - Dshi_0204 0.24 -0.8
202,382 + Dshi_0204 0.28 -0.3
202,467 - Dshi_0204 0.33 +2.3
202,527 + Dshi_0204 0.37 +0.7
202,550 + Dshi_0204 0.38 +4.9
202,577 - Dshi_0204 0.40 +1.2
202,590 - Dshi_0204 0.41 -0.4
202,642 + Dshi_0204 0.44 +2.0
202,657 + Dshi_0204 0.45 -0.9
202,685 + Dshi_0204 0.46 +0.9
202,871 + Dshi_0204 0.57 -2.2
202,871 + Dshi_0204 0.57 -0.8
202,879 - Dshi_0204 0.58 -3.5
202,896 + Dshi_0204 0.59 -0.8
203,144 + Dshi_0204 0.73 +1.0
203,260 - Dshi_0204 0.80 -1.6
203,735 - +1.2
203,991 - Dshi_0205 0.16 -1.1
204,028 + Dshi_0205 0.21 -1.6
204,160 + Dshi_0205 0.38 -3.0
204,383 + Dshi_0205 0.67 +1.2
204,480 - Dshi_0205 0.80 -1.1

Or see this region's nucleotide sequence