Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0202

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0200 and Dshi_0201 overlap by 8 nucleotidesDshi_0201 and Dshi_0202 are separated by 3 nucleotidesDshi_0202 and Dshi_0203 are separated by 68 nucleotidesDshi_0203 and Dshi_0204 are separated by 61 nucleotides Dshi_0200: Dshi_0200 - Ribonuclease III (RefSeq), at 199,101 to 199,790 _0200 Dshi_0201: Dshi_0201 - GTP-binding protein Era (RefSeq), at 199,783 to 200,709 _0201 Dshi_0202: Dshi_0202 - protein of unknown function DUF1491 (RefSeq), at 200,713 to 201,045 _0202 Dshi_0203: Dshi_0203 - DNA repair protein RecO (RefSeq), at 201,114 to 201,839 _0203 Dshi_0204: Dshi_0204 - acyl-CoA dehydrogenase domain protein (RefSeq), at 201,901 to 203,595 _0204 Position (kb) 200 201 202Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 200.654 kb on + strandat 200.786 kb on + strand, within Dshi_0202at 200.786 kb on + strand, within Dshi_0202at 200.992 kb on + strand, within Dshi_0202at 201.059 kb on - strandat 201.132 kb on - strandat 201.194 kb on - strand, within Dshi_0203at 201.715 kb on + strand, within Dshi_0203at 201.875 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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200,654 + -2.2
200,786 + Dshi_0202 0.22 -3.5
200,786 + Dshi_0202 0.22 -1.4
200,992 + Dshi_0202 0.84 +3.5
201,059 - +3.2
201,132 - +1.9
201,194 - Dshi_0203 0.11 -1.2
201,715 + Dshi_0203 0.83 +0.0
201,875 + +1.8

Or see this region's nucleotide sequence