Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0144 and Dshi_0145 are separated by 160 nucleotides Dshi_0145 and Dshi_0146 are separated by 8 nucleotides
Dshi_0144: Dshi_0144 - ammonium transporter (RefSeq), at 143,570 to 144,883
_0144
Dshi_0145: Dshi_0145 - Aspartate transaminase (RefSeq), at 145,044 to 146,222
_0145
Dshi_0146: Dshi_0146 - Rhodanese domain protein (RefSeq), at 146,231 to 147,106
_0146
Position (kb)
145
146
147 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 144.199 kb on - strand, within Dshi_0144 at 144.224 kb on - strand, within Dshi_0144 at 144.240 kb on - strand, within Dshi_0144 at 144.264 kb on + strand, within Dshi_0144 at 144.304 kb on - strand, within Dshi_0144 at 144.456 kb on - strand, within Dshi_0144 at 144.472 kb on - strand, within Dshi_0144 at 144.513 kb on + strand, within Dshi_0144 at 144.570 kb on + strand, within Dshi_0144 at 144.630 kb on + strand, within Dshi_0144 at 144.677 kb on - strand, within Dshi_0144 at 144.711 kb on - strand, within Dshi_0144 at 144.761 kb on - strand at 144.761 kb on - strand at 144.869 kb on - strand at 144.885 kb on - strand at 144.949 kb on - strand at 144.949 kb on - strand at 144.956 kb on + strand at 144.964 kb on + strand at 144.988 kb on - strand at 145.037 kb on + strand at 145.258 kb on + strand, within Dshi_0145 at 145.260 kb on - strand, within Dshi_0145 at 145.316 kb on + strand, within Dshi_0145 at 145.364 kb on + strand at 145.412 kb on - strand, within Dshi_0145 at 145.522 kb on + strand, within Dshi_0145 at 145.726 kb on + strand, within Dshi_0145 at 146.384 kb on - strand, within Dshi_0146 at 146.509 kb on - strand, within Dshi_0146 at 146.531 kb on - strand, within Dshi_0146 at 146.600 kb on - strand, within Dshi_0146 at 146.625 kb on + strand, within Dshi_0146 at 146.725 kb on - strand, within Dshi_0146 at 146.783 kb on - strand, within Dshi_0146 at 147.023 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 144,199 - Dshi_0144 0.48 -1.9 144,224 - Dshi_0144 0.50 -1.5 144,240 - Dshi_0144 0.51 -0.8 144,264 + Dshi_0144 0.53 +0.5 144,304 - Dshi_0144 0.56 +1.3 144,456 - Dshi_0144 0.67 -0.4 144,472 - Dshi_0144 0.69 -0.0 144,513 + Dshi_0144 0.72 +1.6 144,570 + Dshi_0144 0.76 -1.1 144,630 + Dshi_0144 0.81 -1.7 144,677 - Dshi_0144 0.84 -0.3 144,711 - Dshi_0144 0.87 -2.0 144,761 - +2.5 144,761 - -1.7 144,869 - +2.9 144,885 - -1.7 144,949 - -1.9 144,949 - +1.7 144,956 + -0.2 144,964 + +1.1 144,988 - -0.6 145,037 + +2.3 145,258 + Dshi_0145 0.18 -1.1 145,260 - Dshi_0145 0.18 -0.1 145,316 + Dshi_0145 0.23 -0.7 145,364 + +1.3 145,412 - Dshi_0145 0.31 -2.5 145,522 + Dshi_0145 0.41 +2.3 145,726 + Dshi_0145 0.58 -1.3 146,384 - Dshi_0146 0.17 +0.3 146,509 - Dshi_0146 0.32 +0.8 146,531 - Dshi_0146 0.34 +0.1 146,600 - Dshi_0146 0.42 +0.1 146,625 + Dshi_0146 0.45 -3.1 146,725 - Dshi_0146 0.56 +2.3 146,783 - Dshi_0146 0.63 -1.3 147,023 + +1.3
Or see this region's nucleotide sequence