Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0103 and Dshi_0104 overlap by 4 nucleotides Dshi_0104 and Dshi_0105 are separated by 11 nucleotides Dshi_0105 and Dshi_0106 overlap by 4 nucleotides Dshi_0106 and Dshi_0107 are separated by 119 nucleotides
Dshi_0103: Dshi_0103 - Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (RefSeq), at 102,930 to 104,042
_0103
Dshi_0104: Dshi_0104 - GCN5-related N-acetyltransferase (RefSeq), at 104,039 to 104,527
_0104
Dshi_0105: Dshi_0105 - protein of unknown function DUF88 (RefSeq), at 104,539 to 105,249
_0105
Dshi_0106: Dshi_0106 - transcriptional regulator, TetR family (RefSeq), at 105,246 to 105,869
_0106
Dshi_0107: Dshi_0107 - Rubrerythrin (RefSeq), at 105,989 to 106,960
_0107
Position (kb) 104
105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 103.584 kb on + strand, within Dshi_0103 at 103.592 kb on - strand, within Dshi_0103 at 103.652 kb on + strand, within Dshi_0103 at 103.665 kb on + strand, within Dshi_0103 at 103.696 kb on - strand, within Dshi_0103 at 103.711 kb on + strand, within Dshi_0103 at 103.744 kb on - strand, within Dshi_0103 at 103.772 kb on - strand, within Dshi_0103 at 103.918 kb on + strand, within Dshi_0103 at 103.979 kb on + strand at 103.987 kb on - strand at 104.044 kb on - strand at 104.060 kb on + strand at 104.060 kb on + strand at 104.068 kb on - strand at 104.092 kb on - strand, within Dshi_0104 at 104.092 kb on - strand, within Dshi_0104 at 104.132 kb on - strand, within Dshi_0104 at 104.194 kb on + strand, within Dshi_0104 at 104.194 kb on - strand, within Dshi_0104 at 104.202 kb on - strand, within Dshi_0104 at 104.229 kb on + strand, within Dshi_0104 at 104.272 kb on - strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.310 kb on + strand, within Dshi_0104 at 104.388 kb on + strand, within Dshi_0104 at 104.489 kb on - strand at 104.647 kb on + strand, within Dshi_0105 at 104.666 kb on - strand, within Dshi_0105 at 104.666 kb on - strand, within Dshi_0105 at 104.694 kb on - strand, within Dshi_0105 at 104.731 kb on + strand, within Dshi_0105 at 104.830 kb on + strand, within Dshi_0105 at 104.867 kb on + strand, within Dshi_0105 at 104.960 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.114 kb on + strand, within Dshi_0105 at 105.152 kb on + strand, within Dshi_0105 at 105.160 kb on - strand, within Dshi_0105 at 105.160 kb on - strand, within Dshi_0105 at 105.197 kb on - strand at 105.256 kb on - strand at 105.256 kb on - strand at 105.348 kb on - strand, within Dshi_0106 at 105.350 kb on - strand, within Dshi_0106 at 105.357 kb on + strand, within Dshi_0106 at 105.360 kb on - strand, within Dshi_0106 at 105.380 kb on - strand, within Dshi_0106 at 105.432 kb on + strand, within Dshi_0106 at 105.432 kb on + strand, within Dshi_0106 at 105.507 kb on - strand, within Dshi_0106 at 105.546 kb on + strand, within Dshi_0106 at 105.670 kb on + strand, within Dshi_0106 at 105.787 kb on - strand, within Dshi_0106 at 105.879 kb on + strand at 105.884 kb on + strand at 105.889 kb on + strand at 105.927 kb on - strand at 106.083 kb on - strand at 106.220 kb on + strand, within Dshi_0107
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 103,584 + Dshi_0103 0.59 +1.3 103,592 - Dshi_0103 0.59 +0.7 103,652 + Dshi_0103 0.65 -1.9 103,665 + Dshi_0103 0.66 +0.4 103,696 - Dshi_0103 0.69 +0.3 103,711 + Dshi_0103 0.70 +1.6 103,744 - Dshi_0103 0.73 -0.7 103,772 - Dshi_0103 0.76 -2.1 103,918 + Dshi_0103 0.89 -0.6 103,979 + -0.7 103,987 - -2.4 104,044 - -1.7 104,060 + -1.4 104,060 + +0.2 104,068 - +0.3 104,092 - Dshi_0104 0.11 -0.1 104,092 - Dshi_0104 0.11 -2.0 104,132 - Dshi_0104 0.19 -3.7 104,194 + Dshi_0104 0.32 -1.1 104,194 - Dshi_0104 0.32 -1.5 104,202 - Dshi_0104 0.33 +2.3 104,229 + Dshi_0104 0.39 -0.4 104,272 - Dshi_0104 0.48 -1.3 104,308 + Dshi_0104 0.55 -0.2 104,308 + Dshi_0104 0.55 +1.3 104,308 + Dshi_0104 0.55 -0.4 104,310 + Dshi_0104 0.55 -1.4 104,388 + Dshi_0104 0.71 -2.1 104,489 - -3.6 104,647 + Dshi_0105 0.15 +0.2 104,666 - Dshi_0105 0.18 +2.9 104,666 - Dshi_0105 0.18 -0.6 104,694 - Dshi_0105 0.22 -0.3 104,731 + Dshi_0105 0.27 -1.4 104,830 + Dshi_0105 0.41 +0.9 104,867 + Dshi_0105 0.46 +0.4 104,960 - Dshi_0105 0.59 +0.7 105,007 - Dshi_0105 0.66 +1.7 105,007 - Dshi_0105 0.66 +1.3 105,007 - Dshi_0105 0.66 -2.7 105,114 + Dshi_0105 0.81 -0.3 105,152 + Dshi_0105 0.86 -1.1 105,160 - Dshi_0105 0.87 -0.5 105,160 - Dshi_0105 0.87 -0.2 105,197 - -0.6 105,256 - +1.3 105,256 - +3.9 105,348 - Dshi_0106 0.16 -2.5 105,350 - Dshi_0106 0.17 +1.3 105,357 + Dshi_0106 0.18 -0.6 105,360 - Dshi_0106 0.18 +0.3 105,380 - Dshi_0106 0.21 -1.9 105,432 + Dshi_0106 0.30 -1.4 105,432 + Dshi_0106 0.30 -1.1 105,507 - Dshi_0106 0.42 -0.9 105,546 + Dshi_0106 0.48 +1.9 105,670 + Dshi_0106 0.68 -1.1 105,787 - Dshi_0106 0.87 +0.5 105,879 + -1.1 105,884 + -1.6 105,889 + -0.6 105,927 - +1.1 106,083 - +0.1 106,220 + Dshi_0107 0.24 -0.8
Or see this region's nucleotide sequence