Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0062 and Dshi_0063 are separated by 122 nucleotides Dshi_0063 and Dshi_0064 overlap by 14 nucleotides
Dshi_0062: Dshi_0062 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (RefSeq), at 62,385 to 63,650
_0062
Dshi_0063: Dshi_0063 - Inositol-phosphate phosphatase (RefSeq), at 63,773 to 64,567
_0063
Dshi_0064: Dshi_0064 - peptidase U62 modulator of DNA gyrase (RefSeq), at 64,554 to 65,900
_0064
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.616 kb on - strand at 63.645 kb on + strand at 63.645 kb on + strand at 63.653 kb on - strand at 63.698 kb on - strand at 63.711 kb on - strand at 63.857 kb on - strand, within Dshi_0063 at 63.857 kb on - strand, within Dshi_0063 at 63.891 kb on - strand, within Dshi_0063 at 64.002 kb on - strand, within Dshi_0063 at 64.157 kb on + strand, within Dshi_0063 at 64.188 kb on + strand, within Dshi_0063 at 64.259 kb on + strand, within Dshi_0063 at 64.264 kb on + strand, within Dshi_0063 at 64.479 kb on + strand, within Dshi_0063 at 64.569 kb on + strand at 64.606 kb on - strand at 64.613 kb on - strand at 64.641 kb on + strand at 64.855 kb on - strand, within Dshi_0064 at 64.905 kb on - strand, within Dshi_0064 at 65.082 kb on - strand, within Dshi_0064 at 65.240 kb on + strand, within Dshi_0064 at 65.319 kb on + strand, within Dshi_0064 at 65.486 kb on - strand, within Dshi_0064
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 63,616 - -2.4 63,645 + -1.9 63,645 + -0.9 63,653 - +1.6 63,698 - -1.5 63,711 - +1.3 63,857 - Dshi_0063 0.11 +0.3 63,857 - Dshi_0063 0.11 +0.0 63,891 - Dshi_0063 0.15 +0.0 64,002 - Dshi_0063 0.29 +1.8 64,157 + Dshi_0063 0.48 -0.1 64,188 + Dshi_0063 0.52 +0.3 64,259 + Dshi_0063 0.61 -2.3 64,264 + Dshi_0063 0.62 -0.7 64,479 + Dshi_0063 0.89 +1.3 64,569 + +0.6 64,606 - +1.3 64,613 - +1.3 64,641 + -0.5 64,855 - Dshi_0064 0.22 +0.4 64,905 - Dshi_0064 0.26 -0.3 65,082 - Dshi_0064 0.39 -1.3 65,240 + Dshi_0064 0.51 -0.7 65,319 + Dshi_0064 0.57 +0.3 65,486 - Dshi_0064 0.69 -0.4
Or see this region's nucleotide sequence