Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0037

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0036 and Dshi_0037 are separated by 340 nucleotidesDshi_0037 and Dshi_0038 are separated by 215 nucleotides Dshi_0036: Dshi_0036 - exodeoxyribonuclease III Xth (RefSeq), at 38,563 to 39,351 _0036 Dshi_0037: Dshi_0037 - LPXTG-motif cell wall anchor domain (RefSeq), at 39,692 to 40,216 _0037 Dshi_0038: Dshi_0038 - two component transcriptional regulator, winged helix family (RefSeq), at 40,432 to 41,118 _0038 Position (kb) 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 38.794 kb on - strand, within Dshi_0036at 38.846 kb on + strand, within Dshi_0036at 39.021 kb on - strand, within Dshi_0036at 39.083 kb on + strand, within Dshi_0036at 39.128 kb on - strand, within Dshi_0036at 39.162 kb on - strand, within Dshi_0036at 39.176 kb on - strand, within Dshi_0036at 39.295 kb on - strandat 39.317 kb on + strandat 39.325 kb on - strandat 39.341 kb on + strandat 39.371 kb on - strandat 39.410 kb on + strandat 39.424 kb on - strandat 39.482 kb on + strandat 39.520 kb on - strandat 39.520 kb on - strandat 39.525 kb on - strandat 39.528 kb on + strandat 39.637 kb on - strandat 39.642 kb on - strandat 39.644 kb on - strandat 39.649 kb on + strandat 39.669 kb on + strandat 39.669 kb on + strandat 39.692 kb on - strandat 39.694 kb on + strandat 39.706 kb on + strandat 39.786 kb on - strand, within Dshi_0037at 39.930 kb on + strand, within Dshi_0037at 40.212 kb on + strandat 40.212 kb on + strandat 40.327 kb on + strandat 40.370 kb on + strandat 40.713 kb on + strand, within Dshi_0038at 40.948 kb on + strand, within Dshi_0038at 41.122 kb on + strandat 41.124 kb on + strandat 41.172 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
remove
38,794 - Dshi_0036 0.29 -0.1
38,846 + Dshi_0036 0.36 +1.3
39,021 - Dshi_0036 0.58 -1.1
39,083 + Dshi_0036 0.66 -1.9
39,128 - Dshi_0036 0.72 +0.5
39,162 - Dshi_0036 0.76 -2.1
39,176 - Dshi_0036 0.78 +2.9
39,295 - -1.1
39,317 + -2.1
39,325 - +1.3
39,341 + -1.3
39,371 - +2.2
39,410 + -1.7
39,424 - +0.3
39,482 + -2.5
39,520 - +1.3
39,520 - -3.0
39,525 - -2.6
39,528 + -0.7
39,637 - -0.7
39,642 - +1.8
39,644 - +0.7
39,649 + +1.3
39,669 + -0.3
39,669 + +3.4
39,692 - -0.3
39,694 + +1.3
39,706 + -0.8
39,786 - Dshi_0037 0.18 +1.1
39,930 + Dshi_0037 0.45 +2.9
40,212 + -0.7
40,212 + +0.7
40,327 + +1.1
40,370 + -0.3
40,713 + Dshi_0038 0.41 +1.3
40,948 + Dshi_0038 0.75 +3.9
41,122 + -2.1
41,124 + +1.7
41,172 + +3.0

Or see this region's nucleotide sequence