Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0021

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0020 and Dshi_0021 overlap by 47 nucleotidesDshi_0021 and Dshi_0022 are separated by 22 nucleotidesDshi_0022 and Dshi_0023 are separated by 43 nucleotides Dshi_0020: Dshi_0020 - putative transcriptional regulator, CadC (RefSeq), at 25,297 to 26,019 _0020 Dshi_0021: Dshi_0021 - hypothetical protein (RefSeq), at 25,973 to 26,377 _0021 Dshi_0022: Dshi_0022 - hypothetical protein (RefSeq), at 26,400 to 26,954 _0022 Dshi_0023: Dshi_0023 - Ribonuclease H (RefSeq), at 26,998 to 27,618 _0023 Position (kb) 25 26 27Strain fitness (log2 ratio) -2 -1 0 1 2 3at 25.040 kb on + strandat 25.118 kb on - strandat 25.240 kb on + strandat 25.552 kb on - strand, within Dshi_0020at 25.605 kb on + strand, within Dshi_0020at 25.658 kb on + strand, within Dshi_0020at 25.773 kb on - strand, within Dshi_0020at 25.809 kb on - strand, within Dshi_0020at 25.814 kb on - strand, within Dshi_0020at 25.987 kb on + strandat 26.214 kb on - strand, within Dshi_0021at 26.232 kb on - strand, within Dshi_0021at 26.360 kb on + strandat 26.457 kb on - strand, within Dshi_0022at 26.578 kb on - strand, within Dshi_0022at 26.578 kb on - strand, within Dshi_0022at 26.642 kb on + strand, within Dshi_0022at 26.665 kb on + strand, within Dshi_0022at 26.679 kb on - strand, within Dshi_0022at 26.864 kb on - strand, within Dshi_0022at 26.883 kb on + strand, within Dshi_0022at 26.928 kb on - strandat 26.995 kb on + strandat 27.219 kb on + strand, within Dshi_0023at 27.256 kb on - strand, within Dshi_0023at 27.315 kb on - strand, within Dshi_0023at 27.353 kb on + strand, within Dshi_0023at 27.374 kb on - strand, within Dshi_0023at 27.374 kb on - strand, within Dshi_0023

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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25,040 + -1.1
25,118 - +0.4
25,240 + +0.4
25,552 - Dshi_0020 0.35 +1.7
25,605 + Dshi_0020 0.43 +1.3
25,658 + Dshi_0020 0.50 -2.5
25,773 - Dshi_0020 0.66 -1.3
25,809 - Dshi_0020 0.71 -0.6
25,814 - Dshi_0020 0.72 +1.6
25,987 + +1.7
26,214 - Dshi_0021 0.60 +1.3
26,232 - Dshi_0021 0.64 -1.0
26,360 + +1.3
26,457 - Dshi_0022 0.10 +3.6
26,578 - Dshi_0022 0.32 +1.3
26,578 - Dshi_0022 0.32 -0.3
26,642 + Dshi_0022 0.44 -0.3
26,665 + Dshi_0022 0.48 -1.9
26,679 - Dshi_0022 0.50 +1.3
26,864 - Dshi_0022 0.84 +0.7
26,883 + Dshi_0022 0.87 -0.3
26,928 - -1.9
26,995 + -0.3
27,219 + Dshi_0023 0.36 -0.9
27,256 - Dshi_0023 0.42 -0.3
27,315 - Dshi_0023 0.51 +1.6
27,353 + Dshi_0023 0.57 -1.7
27,374 - Dshi_0023 0.61 +3.0
27,374 - Dshi_0023 0.61 +1.3

Or see this region's nucleotide sequence