Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3062

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3061 and DvMF_3062 are separated by 214 nucleotidesDvMF_3062 and DvMF_3063 are separated by 535 nucleotidesDvMF_3063 and groEL are separated by 43 nucleotides DvMF_3061: DvMF_3061 - ABC transporter related (RefSeq), at 3,864,595 to 3,866,586 _3061 DvMF_3062: DvMF_3062 - Na+/H+ antiporter NhaC (RefSeq), at 3,866,801 to 3,868,207 _3062 DvMF_3063: DvMF_3063 - chaperonin Cpn10 (RefSeq), at 3,868,743 to 3,869,030 _3063 DvMF_3064: groEL - chaperonin GroEL (RefSeq), at 3,869,074 to 3,870,720 groEL Position (kb) 3866 3867 3868 3869Strain fitness (log2 ratio) -1 0 1at 3865.828 kb on - strand, within DvMF_3061at 3865.991 kb on - strand, within DvMF_3061at 3866.111 kb on - strand, within DvMF_3061at 3866.118 kb on - strandat 3866.294 kb on - strand, within DvMF_3061at 3866.296 kb on - strand, within DvMF_3061at 3866.469 kb on - strandat 3866.700 kb on + strandat 3866.721 kb on - strandat 3866.811 kb on - strandat 3867.007 kb on + strand, within DvMF_3062at 3867.211 kb on - strand, within DvMF_3062at 3867.339 kb on - strand, within DvMF_3062at 3867.493 kb on + strand, within DvMF_3062at 3867.562 kb on - strand, within DvMF_3062at 3867.674 kb on + strand, within DvMF_3062at 3867.778 kb on + strand, within DvMF_3062at 3867.972 kb on + strand, within DvMF_3062at 3867.972 kb on + strand, within DvMF_3062at 3868.194 kb on - strandat 3868.298 kb on + strandat 3868.298 kb on + strandat 3868.333 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
3,865,828 - DvMF_3061 0.62 +0.2
3,865,991 - DvMF_3061 0.70 -0.5
3,866,111 - DvMF_3061 0.76 -0.3
3,866,118 - +1.4
3,866,294 - DvMF_3061 0.85 -0.2
3,866,296 - DvMF_3061 0.85 -0.4
3,866,469 - -0.3
3,866,700 + -0.0
3,866,721 - -0.3
3,866,811 - -0.7
3,867,007 + DvMF_3062 0.15 -0.0
3,867,211 - DvMF_3062 0.29 -0.2
3,867,339 - DvMF_3062 0.38 -0.4
3,867,493 + DvMF_3062 0.49 +0.2
3,867,562 - DvMF_3062 0.54 +0.5
3,867,674 + DvMF_3062 0.62 -0.8
3,867,778 + DvMF_3062 0.69 +0.1
3,867,972 + DvMF_3062 0.83 +0.2
3,867,972 + DvMF_3062 0.83 -0.4
3,868,194 - -0.3
3,868,298 + +0.4
3,868,298 + -1.4
3,868,333 - +0.4

Or see this region's nucleotide sequence