Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2779 and DvMF_2780 are separated by 504 nucleotides DvMF_2780 and DvMF_2781 are separated by 208 nucleotides DvMF_2781 and DvMF_2782 overlap by 4 nucleotides
DvMF_2779: DvMF_2779 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,515,359 to 3,517,572
_2779
DvMF_2780: DvMF_2780 - ABC transporter, periplasmic substrate-binding protein (RefSeq), at 3,518,077 to 3,518,898
_2780
DvMF_2781: DvMF_2781 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,519,107 to 3,519,802
_2781
DvMF_2782: DvMF_2782 - ABC transporter related (RefSeq), at 3,519,799 to 3,520,653
_2782
Position (kb)
3518
3519 Strain fitness (log2 ratio)
-1
0
1 at 3517.172 kb on - strand, within DvMF_2779 at 3517.825 kb on + strand at 3517.923 kb on + strand at 3518.130 kb on + strand at 3518.438 kb on - strand, within DvMF_2780 at 3518.559 kb on - strand, within DvMF_2780 at 3518.616 kb on - strand, within DvMF_2780 at 3518.633 kb on + strand, within DvMF_2780 at 3518.739 kb on + strand, within DvMF_2780 at 3519.192 kb on + strand, within DvMF_2781 at 3519.219 kb on - strand, within DvMF_2781 at 3519.392 kb on - strand, within DvMF_2781 at 3519.498 kb on + strand, within DvMF_2781 at 3519.710 kb on + strand, within DvMF_2781 at 3519.813 kb on + strand at 3519.826 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 3,517,172 - DvMF_2779 0.82 +0.1 3,517,825 + -0.6 3,517,923 + -0.2 3,518,130 + -0.3 3,518,438 - DvMF_2780 0.44 -0.3 3,518,559 - DvMF_2780 0.59 +0.3 3,518,616 - DvMF_2780 0.66 +0.4 3,518,633 + DvMF_2780 0.68 -0.4 3,518,739 + DvMF_2780 0.81 -0.4 3,519,192 + DvMF_2781 0.12 -0.1 3,519,219 - DvMF_2781 0.16 +0.1 3,519,392 - DvMF_2781 0.41 -0.0 3,519,498 + DvMF_2781 0.56 -0.2 3,519,710 + DvMF_2781 0.87 -0.2 3,519,813 + -0.2 3,519,826 + -0.4
Or see this region's nucleotide sequence