Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2401

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2400 and DvMF_2401 overlap by 4 nucleotidesDvMF_2401 and DvMF_2402 are separated by 418 nucleotides DvMF_2400: DvMF_2400 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,032,972 to 3,034,093 _2400 DvMF_2401: DvMF_2401 - nickel transporter permease NikB (RefSeq), at 3,034,090 to 3,035,031 _2401 DvMF_2402: DvMF_2402 - nickel ABC transporter, periplasmic nickel-binding protein (RefSeq), at 3,035,450 to 3,037,066 _2402 Position (kb) 3034 3035 3036Strain fitness (log2 ratio) -1 0 1at 3033.155 kb on + strand, within DvMF_2400at 3033.340 kb on + strand, within DvMF_2400at 3033.525 kb on - strand, within DvMF_2400at 3033.525 kb on - strand, within DvMF_2400at 3033.597 kb on - strand, within DvMF_2400at 3033.794 kb on + strand, within DvMF_2400at 3033.832 kb on - strand, within DvMF_2400at 3034.308 kb on + strand, within DvMF_2401at 3034.495 kb on + strand, within DvMF_2401at 3035.151 kb on + strandat 3035.151 kb on + strandat 3035.603 kb on - strandat 3035.743 kb on - strand, within DvMF_2402at 3035.899 kb on + strand, within DvMF_2402at 3035.924 kb on - strand, within DvMF_2402

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,033,155 + DvMF_2400 0.16 -0.2
3,033,340 + DvMF_2400 0.33 -1.6
3,033,525 - DvMF_2400 0.49 -0.3
3,033,525 - DvMF_2400 0.49 -0.6
3,033,597 - DvMF_2400 0.56 -0.6
3,033,794 + DvMF_2400 0.73 -1.7
3,033,832 - DvMF_2400 0.77 -0.2
3,034,308 + DvMF_2401 0.23 -0.3
3,034,495 + DvMF_2401 0.43 -0.3
3,035,151 + -0.3
3,035,151 + -0.2
3,035,603 - -0.3
3,035,743 - DvMF_2402 0.18 -0.7
3,035,899 + DvMF_2402 0.28 -0.6
3,035,924 - DvMF_2402 0.29 -0.7

Or see this region's nucleotide sequence