Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2188

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2187 and DvMF_2188 are separated by 118 nucleotidesDvMF_2188 and DvMF_2189 are separated by 258 nucleotides DvMF_2187: DvMF_2187 - pyruvate phosphate dikinase PEP/pyruvate-binding (RefSeq), at 2,730,442 to 2,733,027 _2187 DvMF_2188: DvMF_2188 - response regulator receiver protein (RefSeq), at 2,733,146 to 2,733,505 _2188 DvMF_2189: DvMF_2189 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,733,764 to 2,735,944 _2189 Position (kb) 2733 2734Strain fitness (log2 ratio) -2 -1 0 1at 2732.161 kb on - strand, within DvMF_2187at 2732.344 kb on + strand, within DvMF_2187at 2732.490 kb on + strand, within DvMF_2187at 2732.559 kb on - strand, within DvMF_2187at 2732.602 kb on - strand, within DvMF_2187at 2732.616 kb on - strand, within DvMF_2187at 2733.034 kb on + strandat 2733.034 kb on + strandat 2733.034 kb on + strandat 2733.034 kb on + strandat 2733.042 kb on - strandat 2733.042 kb on - strandat 2733.042 kb on - strandat 2733.207 kb on - strand, within DvMF_2188at 2733.403 kb on - strand, within DvMF_2188at 2733.424 kb on - strand, within DvMF_2188at 2733.450 kb on + strand, within DvMF_2188at 2733.572 kb on - strandat 2733.629 kb on + strandat 2733.648 kb on + strandat 2733.663 kb on + strandat 2733.746 kb on + strandat 2733.759 kb on - strandat 2733.761 kb on + strandat 2733.769 kb on - strandat 2733.795 kb on + strandat 2733.798 kb on - strandat 2733.817 kb on - strandat 2733.828 kb on + strandat 2733.829 kb on - strandat 2733.846 kb on + strandat 2733.846 kb on + strandat 2733.866 kb on + strandat 2734.487 kb on - strand, within DvMF_2189

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,732,161 - DvMF_2187 0.66 -0.2
2,732,344 + DvMF_2187 0.74 -1.0
2,732,490 + DvMF_2187 0.79 -0.0
2,732,559 - DvMF_2187 0.82 +0.2
2,732,602 - DvMF_2187 0.84 -0.9
2,732,616 - DvMF_2187 0.84 -0.5
2,733,034 + -0.6
2,733,034 + -0.5
2,733,034 + -0.5
2,733,034 + +1.2
2,733,042 - -0.3
2,733,042 - -0.8
2,733,042 - -0.4
2,733,207 - DvMF_2188 0.17 -0.1
2,733,403 - DvMF_2188 0.71 -0.6
2,733,424 - DvMF_2188 0.77 +0.5
2,733,450 + DvMF_2188 0.84 -0.7
2,733,572 - -0.3
2,733,629 + +0.4
2,733,648 + -0.2
2,733,663 + -0.5
2,733,746 + -0.4
2,733,759 - -0.6
2,733,761 + -0.1
2,733,769 - -0.3
2,733,795 + -1.1
2,733,798 - +0.1
2,733,817 - -0.3
2,733,828 + -0.7
2,733,829 - -0.8
2,733,846 + -0.5
2,733,846 + -0.6
2,733,866 + -1.3
2,734,487 - DvMF_2189 0.33 -2.3

Or see this region's nucleotide sequence