Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2175

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2174 and DvMF_2175 are separated by 299 nucleotidesDvMF_2175 and DvMF_2176 are separated by 107 nucleotidesDvMF_2176 and DvMF_2177 are separated by 372 nucleotides DvMF_2174: DvMF_2174 - AzlC family protein (RefSeq), at 2,711,285 to 2,712,133 _2174 DvMF_2175: DvMF_2175 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 2,712,433 to 2,713,929 _2175 DvMF_2176: DvMF_2176 - hypothetical protein (RefSeq), at 2,714,037 to 2,714,462 _2176 DvMF_2177: DvMF_2177 - Hydantoinase/oxoprolinase (RefSeq), at 2,714,835 to 2,716,832 _2177 Position (kb) 2712 2713 2714Strain fitness (log2 ratio) -1 0 1at 2711.470 kb on + strand, within DvMF_2174at 2711.621 kb on - strand, within DvMF_2174at 2711.806 kb on + strand, within DvMF_2174at 2711.960 kb on + strand, within DvMF_2174at 2712.061 kb on - strandat 2712.293 kb on - strandat 2712.341 kb on - strandat 2712.375 kb on + strandat 2712.602 kb on - strand, within DvMF_2175at 2712.610 kb on - strand, within DvMF_2175at 2712.724 kb on + strand, within DvMF_2175at 2712.775 kb on + strand, within DvMF_2175at 2712.825 kb on - strand, within DvMF_2175at 2712.995 kb on + strand, within DvMF_2175at 2713.028 kb on + strand, within DvMF_2175at 2713.059 kb on - strand, within DvMF_2175at 2713.059 kb on - strand, within DvMF_2175at 2713.095 kb on + strand, within DvMF_2175at 2713.186 kb on - strand, within DvMF_2175at 2713.442 kb on - strand, within DvMF_2175at 2713.473 kb on - strand, within DvMF_2175at 2713.506 kb on + strand, within DvMF_2175at 2713.744 kb on - strand, within DvMF_2175at 2714.464 kb on + strandat 2714.464 kb on + strandat 2714.465 kb on - strandat 2714.734 kb on + strandat 2714.897 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,711,470 + DvMF_2174 0.22 -0.6
2,711,621 - DvMF_2174 0.40 -0.4
2,711,806 + DvMF_2174 0.61 -0.3
2,711,960 + DvMF_2174 0.80 -0.5
2,712,061 - -0.7
2,712,293 - -0.4
2,712,341 - +0.2
2,712,375 + -0.4
2,712,602 - DvMF_2175 0.11 -0.2
2,712,610 - DvMF_2175 0.12 -0.3
2,712,724 + DvMF_2175 0.19 -0.3
2,712,775 + DvMF_2175 0.23 +0.8
2,712,825 - DvMF_2175 0.26 -0.5
2,712,995 + DvMF_2175 0.38 -0.9
2,713,028 + DvMF_2175 0.40 -0.5
2,713,059 - DvMF_2175 0.42 -1.1
2,713,059 - DvMF_2175 0.42 -0.3
2,713,095 + DvMF_2175 0.44 -0.4
2,713,186 - DvMF_2175 0.50 -0.3
2,713,442 - DvMF_2175 0.67 -0.5
2,713,473 - DvMF_2175 0.69 -0.1
2,713,506 + DvMF_2175 0.72 -0.3
2,713,744 - DvMF_2175 0.88 -0.1
2,714,464 + +0.1
2,714,464 + -0.6
2,714,465 - -0.7
2,714,734 + -0.7
2,714,897 + -0.3

Or see this region's nucleotide sequence