Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2159 and DvMF_2160 are separated by 196 nucleotides DvMF_2160 and DvMF_2161 are separated by 142 nucleotides DvMF_2161 and DvMF_2162 overlap by 4 nucleotides
DvMF_2159: DvMF_2159 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,692,492 to 2,694,081
_2159
DvMF_2160: DvMF_2160 - hypothetical protein (RefSeq), at 2,694,278 to 2,694,454
_2160
DvMF_2161: DvMF_2161 - transcriptional regulator, MarR family (RefSeq), at 2,694,597 to 2,695,127
_2161
DvMF_2162: DvMF_2162 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,695,124 to 2,696,593
_2162
Position (kb)
2694
2695 Strain fitness (log2 ratio)
-1
0
1 at 2693.383 kb on + strand, within DvMF_2159 at 2693.849 kb on - strand, within DvMF_2159 at 2693.860 kb on + strand, within DvMF_2159 at 2693.955 kb on + strand at 2693.962 kb on + strand at 2693.963 kb on - strand at 2693.970 kb on - strand at 2694.000 kb on - strand at 2694.106 kb on - strand at 2694.182 kb on - strand at 2694.197 kb on - strand at 2694.233 kb on - strand at 2694.252 kb on + strand at 2694.410 kb on + strand, within DvMF_2160 at 2694.749 kb on + strand, within DvMF_2161 at 2694.784 kb on + strand, within DvMF_2161 at 2694.784 kb on + strand, within DvMF_2161 at 2694.989 kb on + strand, within DvMF_2161 at 2695.123 kb on - strand at 2695.198 kb on - strand at 2695.391 kb on + strand, within DvMF_2162
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 2,693,383 + DvMF_2159 0.56 -0.5 2,693,849 - DvMF_2159 0.85 -1.0 2,693,860 + DvMF_2159 0.86 -0.6 2,693,955 + -0.8 2,693,962 + -0.1 2,693,963 - -1.4 2,693,970 - -0.6 2,694,000 - -0.4 2,694,106 - -0.2 2,694,182 - -0.8 2,694,197 - -0.1 2,694,233 - -0.4 2,694,252 + -0.0 2,694,410 + DvMF_2160 0.75 -0.3 2,694,749 + DvMF_2161 0.29 +0.6 2,694,784 + DvMF_2161 0.35 +0.1 2,694,784 + DvMF_2161 0.35 -0.1 2,694,989 + DvMF_2161 0.74 +0.4 2,695,123 - +0.0 2,695,198 - -0.8 2,695,391 + DvMF_2162 0.18 -0.6
Or see this region's nucleotide sequence