Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2019 and DvMF_2020 overlap by 4 nucleotides DvMF_2020 and DvMF_2021 are separated by 128 nucleotides DvMF_2021 and DvMF_2022 are separated by 355 nucleotides
DvMF_2019: DvMF_2019 - dihydrouridine synthase DuS (RefSeq), at 2,500,863 to 2,501,918
_2019
DvMF_2020: DvMF_2020 - hydroxymethylbutenyl pyrophosphate reductase (RefSeq), at 2,501,915 to 2,502,760
_2020
DvMF_2021: DvMF_2021 - response regulator receiver modulated CheW protein (RefSeq), at 2,502,889 to 2,503,839
_2021
DvMF_2022: DvMF_2022 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 2,504,195 to 2,505,976
_2022
Position (kb)
2502
2503
2504 Strain fitness (log2 ratio)
-2
-1
0
1 at 2502.996 kb on + strand, within DvMF_2021 at 2503.006 kb on - strand, within DvMF_2021 at 2503.362 kb on + strand, within DvMF_2021 at 2503.540 kb on + strand, within DvMF_2021 at 2503.649 kb on + strand, within DvMF_2021 at 2503.657 kb on - strand, within DvMF_2021 at 2503.668 kb on + strand, within DvMF_2021 at 2503.668 kb on + strand, within DvMF_2021 at 2503.668 kb on + strand, within DvMF_2021 at 2504.084 kb on - strand at 2504.114 kb on - strand at 2504.134 kb on - strand at 2504.335 kb on - strand at 2504.351 kb on - strand at 2504.359 kb on - strand at 2504.830 kb on + strand, within DvMF_2022
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 2,502,996 + DvMF_2021 0.11 -0.5 2,503,006 - DvMF_2021 0.12 -0.5 2,503,362 + DvMF_2021 0.50 -0.2 2,503,540 + DvMF_2021 0.68 -0.5 2,503,649 + DvMF_2021 0.80 -1.8 2,503,657 - DvMF_2021 0.81 -0.7 2,503,668 + DvMF_2021 0.82 +0.7 2,503,668 + DvMF_2021 0.82 -0.3 2,503,668 + DvMF_2021 0.82 +0.1 2,504,084 - -1.2 2,504,114 - -0.9 2,504,134 - -1.1 2,504,335 - -0.5 2,504,351 - -0.2 2,504,359 - -0.4 2,504,830 + DvMF_2022 0.36 -0.2
Or see this region's nucleotide sequence