Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1992 and DvMF_1993 overlap by 16 nucleotides DvMF_1993 and DvMF_1994 are separated by 310 nucleotides
DvMF_1992: DvMF_1992 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,468,570 to 2,469,688
_1992
DvMF_1993: DvMF_1993 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,469,673 to 2,471,133
_1993
DvMF_1994: DvMF_1994 - transcriptional regulator, GntR family (RefSeq), at 2,471,444 to 2,472,175
_1994
Position (kb)
2469
2470
2471
2472 Strain fitness (log2 ratio)
-2
-1
0
1 at 2468.864 kb on - strand, within DvMF_1992 at 2468.990 kb on - strand, within DvMF_1992 at 2469.056 kb on - strand, within DvMF_1992 at 2469.220 kb on - strand, within DvMF_1992 at 2469.225 kb on + strand, within DvMF_1992 at 2469.306 kb on - strand, within DvMF_1992 at 2469.333 kb on + strand, within DvMF_1992 at 2469.449 kb on - strand, within DvMF_1992 at 2469.521 kb on - strand, within DvMF_1992 at 2469.663 kb on + strand at 2470.006 kb on - strand, within DvMF_1993 at 2470.378 kb on - strand, within DvMF_1993 at 2470.380 kb on + strand, within DvMF_1993 at 2470.494 kb on + strand, within DvMF_1993 at 2471.192 kb on - strand at 2471.203 kb on + strand at 2471.351 kb on + strand at 2471.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 2,468,864 - DvMF_1992 0.26 -1.8 2,468,990 - DvMF_1992 0.38 -1.7 2,469,056 - DvMF_1992 0.43 -0.4 2,469,220 - DvMF_1992 0.58 -2.0 2,469,225 + DvMF_1992 0.59 -1.0 2,469,306 - DvMF_1992 0.66 -1.3 2,469,333 + DvMF_1992 0.68 -1.3 2,469,449 - DvMF_1992 0.79 -1.2 2,469,521 - DvMF_1992 0.85 -1.2 2,469,663 + -0.7 2,470,006 - DvMF_1993 0.23 -1.2 2,470,378 - DvMF_1993 0.48 -1.4 2,470,380 + DvMF_1993 0.48 -1.2 2,470,494 + DvMF_1993 0.56 -1.0 2,471,192 - -0.1 2,471,203 + +0.1 2,471,351 + -0.1 2,471,359 - -0.4
Or see this region's nucleotide sequence