Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1780

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1778 and DvMF_1779 are separated by 66 nucleotidesDvMF_1779 and DvMF_1780 are separated by 205 nucleotidesDvMF_1780 and DvMF_1781 are separated by 613 nucleotides DvMF_1778: DvMF_1778 - hypothetical protein (RefSeq), at 2,177,729 to 2,178,382 _1778 DvMF_1779: DvMF_1779 - helix-turn-helix protein, CopG family (RefSeq), at 2,178,449 to 2,178,697 _1779 DvMF_1780: DvMF_1780 - Aldehyde Dehydrogenase (RefSeq), at 2,178,903 to 2,180,585 _1780 DvMF_1781: DvMF_1781 - glycosyl transferase family 8 (RefSeq), at 2,181,199 to 2,182,047 _1781 Position (kb) 2178 2179 2180 2181Strain fitness (log2 ratio) -1 0 1at 2177.954 kb on + strand, within DvMF_1778at 2178.403 kb on + strandat 2178.403 kb on + strandat 2178.403 kb on + strandat 2178.505 kb on - strand, within DvMF_1779at 2178.610 kb on + strand, within DvMF_1779at 2178.619 kb on - strand, within DvMF_1779at 2178.643 kb on + strand, within DvMF_1779at 2178.668 kb on - strand, within DvMF_1779at 2178.700 kb on - strandat 2178.778 kb on + strandat 2178.828 kb on + strandat 2178.846 kb on - strandat 2178.846 kb on - strandat 2179.299 kb on + strand, within DvMF_1780at 2179.567 kb on + strand, within DvMF_1780at 2179.567 kb on + strand, within DvMF_1780at 2179.575 kb on - strand, within DvMF_1780at 2179.638 kb on + strand, within DvMF_1780at 2179.638 kb on + strand, within DvMF_1780at 2179.638 kb on + strand, within DvMF_1780at 2179.646 kb on - strand, within DvMF_1780at 2179.945 kb on + strand, within DvMF_1780at 2179.972 kb on + strand, within DvMF_1780at 2180.055 kb on + strand, within DvMF_1780at 2180.105 kb on + strand, within DvMF_1780at 2180.263 kb on + strand, within DvMF_1780at 2180.342 kb on + strand, within DvMF_1780at 2180.342 kb on + strand, within DvMF_1780at 2180.342 kb on + strand, within DvMF_1780at 2180.375 kb on - strand, within DvMF_1780at 2180.411 kb on + strand, within DvMF_1780at 2180.506 kb on - strandat 2180.758 kb on + strandat 2180.780 kb on + strandat 2180.803 kb on - strandat 2181.252 kb on + strandat 2181.273 kb on + strandat 2181.472 kb on + strand, within DvMF_1781at 2181.544 kb on - strand, within DvMF_1781

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,177,954 + DvMF_1778 0.34 -1.5
2,178,403 + -0.3
2,178,403 + -1.4
2,178,403 + -0.5
2,178,505 - DvMF_1779 0.22 -0.5
2,178,610 + DvMF_1779 0.65 -0.1
2,178,619 - DvMF_1779 0.68 -0.0
2,178,643 + DvMF_1779 0.78 +0.0
2,178,668 - DvMF_1779 0.88 -0.4
2,178,700 - -0.3
2,178,778 + -0.4
2,178,828 + +0.1
2,178,846 - -0.3
2,178,846 - -0.1
2,179,299 + DvMF_1780 0.24 +0.1
2,179,567 + DvMF_1780 0.39 -0.2
2,179,567 + DvMF_1780 0.39 -0.7
2,179,575 - DvMF_1780 0.40 -1.0
2,179,638 + DvMF_1780 0.44 -0.3
2,179,638 + DvMF_1780 0.44 -0.4
2,179,638 + DvMF_1780 0.44 -0.0
2,179,646 - DvMF_1780 0.44 -0.1
2,179,945 + DvMF_1780 0.62 -0.2
2,179,972 + DvMF_1780 0.64 -0.1
2,180,055 + DvMF_1780 0.68 -0.6
2,180,105 + DvMF_1780 0.71 -0.2
2,180,263 + DvMF_1780 0.81 -0.2
2,180,342 + DvMF_1780 0.86 -0.2
2,180,342 + DvMF_1780 0.86 -0.1
2,180,342 + DvMF_1780 0.86 -0.8
2,180,375 - DvMF_1780 0.87 -0.0
2,180,411 + DvMF_1780 0.90 -0.7
2,180,506 - -0.3
2,180,758 + -0.3
2,180,780 + -0.9
2,180,803 - -1.0
2,181,252 + +0.9
2,181,273 + -0.4
2,181,472 + DvMF_1781 0.32 +0.3
2,181,544 - DvMF_1781 0.41 +0.0

Or see this region's nucleotide sequence