Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1779

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1777 and DvMF_1778 are separated by 131 nucleotidesDvMF_1778 and DvMF_1779 are separated by 66 nucleotidesDvMF_1779 and DvMF_1780 are separated by 205 nucleotides DvMF_1777: DvMF_1777 - prophage PSPPH06, putative reverse transcriptase/maturase (RefSeq), at 2,176,242 to 2,177,597 _1777 DvMF_1778: DvMF_1778 - hypothetical protein (RefSeq), at 2,177,729 to 2,178,382 _1778 DvMF_1779: DvMF_1779 - helix-turn-helix protein, CopG family (RefSeq), at 2,178,449 to 2,178,697 _1779 DvMF_1780: DvMF_1780 - Aldehyde Dehydrogenase (RefSeq), at 2,178,903 to 2,180,585 _1780 Position (kb) 2178 2179Strain fitness (log2 ratio) -1 0 1at 2177.954 kb on + strand, within DvMF_1778at 2178.403 kb on + strandat 2178.403 kb on + strandat 2178.403 kb on + strandat 2178.505 kb on - strand, within DvMF_1779at 2178.610 kb on + strand, within DvMF_1779at 2178.619 kb on - strand, within DvMF_1779at 2178.643 kb on + strand, within DvMF_1779at 2178.668 kb on - strand, within DvMF_1779at 2178.700 kb on - strandat 2178.778 kb on + strandat 2178.828 kb on + strandat 2178.846 kb on - strandat 2178.846 kb on - strandat 2179.299 kb on + strand, within DvMF_1780at 2179.567 kb on + strand, within DvMF_1780at 2179.567 kb on + strand, within DvMF_1780at 2179.575 kb on - strand, within DvMF_1780at 2179.638 kb on + strand, within DvMF_1780at 2179.638 kb on + strand, within DvMF_1780at 2179.638 kb on + strand, within DvMF_1780at 2179.646 kb on - strand, within DvMF_1780

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,177,954 + DvMF_1778 0.34 -1.5
2,178,403 + -0.3
2,178,403 + -1.4
2,178,403 + -0.5
2,178,505 - DvMF_1779 0.22 -0.5
2,178,610 + DvMF_1779 0.65 -0.1
2,178,619 - DvMF_1779 0.68 -0.0
2,178,643 + DvMF_1779 0.78 +0.0
2,178,668 - DvMF_1779 0.88 -0.4
2,178,700 - -0.3
2,178,778 + -0.4
2,178,828 + +0.1
2,178,846 - -0.3
2,178,846 - -0.1
2,179,299 + DvMF_1780 0.24 +0.1
2,179,567 + DvMF_1780 0.39 -0.2
2,179,567 + DvMF_1780 0.39 -0.7
2,179,575 - DvMF_1780 0.40 -1.0
2,179,638 + DvMF_1780 0.44 -0.3
2,179,638 + DvMF_1780 0.44 -0.4
2,179,638 + DvMF_1780 0.44 -0.0
2,179,646 - DvMF_1780 0.44 -0.1

Or see this region's nucleotide sequence