Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1503

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1501 and DvMF_1502 are separated by 242 nucleotidesDvMF_1502 and DvMF_1503 overlap by 4 nucleotidesDvMF_1503 and DvMF_1504 are separated by 1 nucleotidesDvMF_1504 and DvMF_1505 are separated by 1 nucleotides DvMF_1501: DvMF_1501 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,852,305 to 1,854,350 _1501 DvMF_1502: DvMF_1502 - protein of unknown function DUF330 (RefSeq), at 1,854,593 to 1,855,336 _1502 DvMF_1503: DvMF_1503 - Mammalian cell entry related domain protein (RefSeq), at 1,855,333 to 1,856,256 _1503 DvMF_1504: DvMF_1504 - ABC transporter related (RefSeq), at 1,856,258 to 1,857,109 _1504 DvMF_1505: DvMF_1505 - protein of unknown function DUF140 (RefSeq), at 1,857,111 to 1,858,403 _1505 Position (kb) 1855 1856 1857Strain fitness (log2 ratio) -1 0 1at 1854.448 kb on - strandat 1854.552 kb on + strandat 1854.552 kb on + strandat 1854.736 kb on - strand, within DvMF_1502at 1854.758 kb on - strand, within DvMF_1502at 1854.803 kb on + strand, within DvMF_1502at 1855.164 kb on + strand, within DvMF_1502at 1855.614 kb on - strand, within DvMF_1503at 1855.678 kb on - strand, within DvMF_1503at 1855.901 kb on - strand, within DvMF_1503at 1855.972 kb on - strand, within DvMF_1503at 1856.067 kb on + strand, within DvMF_1503at 1856.067 kb on + strand, within DvMF_1503at 1856.317 kb on + strandat 1856.325 kb on - strandat 1856.353 kb on - strand, within DvMF_1504at 1856.521 kb on + strand, within DvMF_1504at 1856.653 kb on - strand, within DvMF_1504at 1856.740 kb on + strand, within DvMF_1504at 1856.955 kb on - strand, within DvMF_1504at 1857.245 kb on - strand, within DvMF_1505

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,854,448 - -0.6
1,854,552 + -0.1
1,854,552 + -0.1
1,854,736 - DvMF_1502 0.19 -1.1
1,854,758 - DvMF_1502 0.22 -1.2
1,854,803 + DvMF_1502 0.28 -0.5
1,855,164 + DvMF_1502 0.77 -0.5
1,855,614 - DvMF_1503 0.30 -0.3
1,855,678 - DvMF_1503 0.37 -0.1
1,855,901 - DvMF_1503 0.61 +0.1
1,855,972 - DvMF_1503 0.69 -0.4
1,856,067 + DvMF_1503 0.79 -0.6
1,856,067 + DvMF_1503 0.79 +0.0
1,856,317 + -0.3
1,856,325 - -0.2
1,856,353 - DvMF_1504 0.11 -0.2
1,856,521 + DvMF_1504 0.31 -0.9
1,856,653 - DvMF_1504 0.46 +0.4
1,856,740 + DvMF_1504 0.57 -0.4
1,856,955 - DvMF_1504 0.82 -1.5
1,857,245 - DvMF_1505 0.10 -0.6

Or see this region's nucleotide sequence