Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1301

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1299 and DvMF_1300 overlap by 1 nucleotidesDvMF_1300 and DvMF_1301 overlap by 14 nucleotidesDvMF_1301 and DvMF_1302 are separated by 541 nucleotidesDvMF_1302 and DvMF_1303 overlap by 23 nucleotides DvMF_1299: DvMF_1299 - hypothetical protein (RefSeq), at 1,589,404 to 1,589,949 _1299 DvMF_1300: DvMF_1300 - hypothetical protein (RefSeq), at 1,589,949 to 1,590,749 _1300 DvMF_1301: DvMF_1301 - baseplate assembly protein, putative (RefSeq), at 1,590,736 to 1,591,461 _1301 DvMF_1302: DvMF_1302 - baseplate assembly protein, putative (RefSeq), at 1,592,003 to 1,592,437 _1302 DvMF_1303: DvMF_1303 - baseplate assembly protein, putative (RefSeq), at 1,592,415 to 1,593,587 _1303 Position (kb) 1590 1591 1592Strain fitness (log2 ratio) -1 0 1at 1589.854 kb on + strand, within DvMF_1299at 1589.879 kb on - strand, within DvMF_1299at 1590.058 kb on + strand, within DvMF_1300at 1590.254 kb on + strand, within DvMF_1300at 1590.462 kb on - strand, within DvMF_1300at 1590.507 kb on + strand, within DvMF_1300at 1590.509 kb on + strand, within DvMF_1300at 1590.929 kb on + strand, within DvMF_1301at 1591.014 kb on - strand, within DvMF_1301at 1591.571 kb on - strandat 1592.161 kb on + strand, within DvMF_1302at 1592.203 kb on + strand, within DvMF_1302at 1592.261 kb on - strand, within DvMF_1302at 1592.302 kb on - strand, within DvMF_1302at 1592.318 kb on + strand, within DvMF_1302at 1592.375 kb on - strand, within DvMF_1302at 1592.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,589,854 + DvMF_1299 0.82 +0.2
1,589,879 - DvMF_1299 0.87 -0.1
1,590,058 + DvMF_1300 0.14 +0.0
1,590,254 + DvMF_1300 0.38 -0.5
1,590,462 - DvMF_1300 0.64 -0.1
1,590,507 + DvMF_1300 0.70 -0.1
1,590,509 + DvMF_1300 0.70 -0.3
1,590,929 + DvMF_1301 0.27 +0.3
1,591,014 - DvMF_1301 0.38 +0.2
1,591,571 - +0.3
1,592,161 + DvMF_1302 0.36 -0.1
1,592,203 + DvMF_1302 0.46 -0.2
1,592,261 - DvMF_1302 0.59 +0.0
1,592,302 - DvMF_1302 0.69 +0.6
1,592,318 + DvMF_1302 0.72 -0.0
1,592,375 - DvMF_1302 0.86 +0.1
1,592,453 - -0.4

Or see this region's nucleotide sequence