Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0985

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_R0028 and DvMF_0985 are separated by 965 nucleotidesDvMF_0985 and DvMF_0986 are separated by 311 nucleotides DvMF_R0028: DvMF_R0028 - tRNA-Val (RefSeq), at 1,194,061 to 1,194,135 _R0028 DvMF_0985: DvMF_0985 - K potassium transporter (RefSeq), at 1,195,101 to 1,197,143 _0985 DvMF_0986: DvMF_0986 - 2-hydroxyglutaryl-CoA dehydratase D-component (RefSeq), at 1,197,455 to 1,198,594 _0986 Position (kb) 1195 1196 1197 1198Strain fitness (log2 ratio) -2 -1 0 1at 1194.725 kb on + strandat 1194.739 kb on + strandat 1194.896 kb on - strandat 1195.278 kb on + strandat 1195.650 kb on - strand, within DvMF_0985at 1195.665 kb on + strand, within DvMF_0985at 1195.666 kb on + strand, within DvMF_0985at 1195.831 kb on + strand, within DvMF_0985at 1195.915 kb on + strand, within DvMF_0985at 1195.931 kb on - strand, within DvMF_0985at 1195.933 kb on + strand, within DvMF_0985at 1196.127 kb on + strand, within DvMF_0985at 1196.150 kb on + strand, within DvMF_0985at 1196.282 kb on + strand, within DvMF_0985at 1196.372 kb on - strand, within DvMF_0985at 1196.491 kb on - strand, within DvMF_0985at 1196.868 kb on + strand, within DvMF_0985at 1196.962 kb on - strandat 1197.005 kb on - strandat 1197.060 kb on - strandat 1197.180 kb on + strandat 1197.417 kb on + strandat 1197.425 kb on - strandat 1197.625 kb on + strand, within DvMF_0986at 1197.813 kb on - strand, within DvMF_0986at 1197.845 kb on + strand, within DvMF_0986at 1197.880 kb on - strand, within DvMF_0986

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,194,725 + +0.2
1,194,739 + +0.1
1,194,896 - +0.5
1,195,278 + +0.3
1,195,650 - DvMF_0985 0.27 +0.2
1,195,665 + DvMF_0985 0.28 +0.8
1,195,666 + DvMF_0985 0.28 +0.5
1,195,831 + DvMF_0985 0.36 +0.1
1,195,915 + DvMF_0985 0.40 -0.0
1,195,931 - DvMF_0985 0.41 -0.2
1,195,933 + DvMF_0985 0.41 +0.3
1,196,127 + DvMF_0985 0.50 +0.1
1,196,150 + DvMF_0985 0.51 +0.4
1,196,282 + DvMF_0985 0.58 +0.0
1,196,372 - DvMF_0985 0.62 -0.5
1,196,491 - DvMF_0985 0.68 -0.1
1,196,868 + DvMF_0985 0.86 -0.3
1,196,962 - +0.1
1,197,005 - -0.1
1,197,060 - -0.3
1,197,180 + -0.1
1,197,417 + +0.4
1,197,425 - +0.5
1,197,625 + DvMF_0986 0.15 -2.2
1,197,813 - DvMF_0986 0.31 -0.1
1,197,845 + DvMF_0986 0.34 +0.2
1,197,880 - DvMF_0986 0.37 -1.2

Or see this region's nucleotide sequence