Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0984

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpmI and infC are separated by 215 nucleotidesinfC and DvMF_0984 are separated by 7 nucleotidesDvMF_0984 and DvMF_R0028 are separated by 89 nucleotides DvMF_0982: rpmI - 50S ribosomal protein L35 (RefSeq), at 1,191,086 to 1,191,283 rpmI DvMF_0983: infC - translation initiation factor IF-3 (RefSeq), at 1,191,499 to 1,192,029 infC DvMF_0984: DvMF_0984 - threonyl-tRNA synthetase (RefSeq), at 1,192,037 to 1,193,971 _0984 DvMF_R0028: DvMF_R0028 - tRNA-Val (RefSeq), at 1,194,061 to 1,194,135 _R0028 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -2 -1 0 1at 1191.098 kb on - strandat 1194.725 kb on + strandat 1194.739 kb on + strandat 1194.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,191,098 - -2.0
1,194,725 + +0.2
1,194,739 + +0.1
1,194,896 - +0.5

Or see this region's nucleotide sequence