Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0761

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0760 and DvMF_0761 are separated by 309 nucleotidesDvMF_0761 and DvMF_0762 are separated by 174 nucleotides DvMF_0760: DvMF_0760 - PSP1 domain protein (RefSeq), at 906,208 to 907,884 _0760 DvMF_0761: DvMF_0761 - metal dependent phosphohydrolase (RefSeq), at 908,194 to 908,751 _0761 DvMF_0762: DvMF_0762 - glycosyl transferase family 2 (RefSeq), at 908,926 to 909,921 _0762 Position (kb) 908 909Strain fitness (log2 ratio) -1 0 1at 908.087 kb on + strandat 908.245 kb on - strandat 908.448 kb on - strand, within DvMF_0761at 908.538 kb on + strand, within DvMF_0761at 908.672 kb on + strand, within DvMF_0761at 908.680 kb on - strand, within DvMF_0761at 908.680 kb on - strand, within DvMF_0761at 908.741 kb on - strandat 908.755 kb on + strandat 908.755 kb on + strandat 908.908 kb on - strandat 909.244 kb on - strand, within DvMF_0762at 909.395 kb on + strand, within DvMF_0762at 909.490 kb on - strand, within DvMF_0762at 909.497 kb on + strand, within DvMF_0762at 909.550 kb on - strand, within DvMF_0762at 909.633 kb on - strand, within DvMF_0762at 909.717 kb on - strand, within DvMF_0762

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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908,087 + -0.4
908,245 - +0.1
908,448 - DvMF_0761 0.46 +0.3
908,538 + DvMF_0761 0.62 -0.4
908,672 + DvMF_0761 0.86 +0.1
908,680 - DvMF_0761 0.87 +0.3
908,680 - DvMF_0761 0.87 -0.3
908,741 - -0.7
908,755 + -0.7
908,755 + -0.2
908,908 - +0.0
909,244 - DvMF_0762 0.32 +1.1
909,395 + DvMF_0762 0.47 -0.3
909,490 - DvMF_0762 0.57 -0.2
909,497 + DvMF_0762 0.57 -0.3
909,550 - DvMF_0762 0.63 -0.3
909,633 - DvMF_0762 0.71 -0.6
909,717 - DvMF_0762 0.79 -0.4

Or see this region's nucleotide sequence