Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0358

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0357 and DvMF_0358 are separated by 275 nucleotidesDvMF_0358 and DvMF_0359 are separated by 44 nucleotides DvMF_0357: DvMF_0357 - histidine triad (HIT) protein (RefSeq), at 417,126 to 418,022 _0357 DvMF_0358: DvMF_0358 - CBS domain containing protein (RefSeq), at 418,298 to 421,531 _0358 DvMF_0359: DvMF_0359 - tyrosine recombinase XerD (RefSeq), at 421,576 to 422,448 _0359 Position (kb) 418 419 420 421 422Strain fitness (log2 ratio) -2 -1 0 1at 417.603 kb on - strand, within DvMF_0357at 417.603 kb on - strand, within DvMF_0357at 417.760 kb on + strand, within DvMF_0357at 417.766 kb on + strand, within DvMF_0357at 417.844 kb on + strand, within DvMF_0357at 417.869 kb on - strand, within DvMF_0357at 417.914 kb on - strand, within DvMF_0357at 417.914 kb on - strand, within DvMF_0357at 418.125 kb on - strandat 418.125 kb on - strandat 418.125 kb on - strandat 418.239 kb on + strandat 418.274 kb on + strandat 418.358 kb on + strandat 418.415 kb on + strandat 418.492 kb on - strandat 418.507 kb on + strandat 418.541 kb on + strandat 418.818 kb on + strand, within DvMF_0358at 418.908 kb on + strand, within DvMF_0358at 418.925 kb on + strand, within DvMF_0358at 419.100 kb on - strand, within DvMF_0358at 419.102 kb on + strand, within DvMF_0358at 419.102 kb on + strand, within DvMF_0358at 419.126 kb on - strand, within DvMF_0358at 419.290 kb on + strand, within DvMF_0358at 419.433 kb on + strand, within DvMF_0358at 419.504 kb on - strand, within DvMF_0358at 419.615 kb on + strand, within DvMF_0358at 420.215 kb on + strand, within DvMF_0358at 420.223 kb on - strand, within DvMF_0358at 420.336 kb on + strand, within DvMF_0358at 420.430 kb on + strand, within DvMF_0358at 420.647 kb on - strand, within DvMF_0358at 420.704 kb on - strand, within DvMF_0358at 420.751 kb on - strand, within DvMF_0358at 420.772 kb on + strand, within DvMF_0358at 420.791 kb on - strand, within DvMF_0358at 420.808 kb on - strand, within DvMF_0358at 420.923 kb on - strand, within DvMF_0358at 420.961 kb on + strand, within DvMF_0358at 421.223 kb on - strandat 421.223 kb on - strandat 421.252 kb on - strandat 421.352 kb on + strandat 421.436 kb on - strandat 421.472 kb on - strandat 421.582 kb on - strandat 421.591 kb on + strandat 421.632 kb on + strandat 421.706 kb on - strand, within DvMF_0359at 421.809 kb on - strand, within DvMF_0359at 421.939 kb on - strand, within DvMF_0359at 422.016 kb on + strand, within DvMF_0359at 422.096 kb on + strand, within DvMF_0359at 422.099 kb on - strand, within DvMF_0359at 422.101 kb on + strand, within DvMF_0359at 422.336 kb on + strand, within DvMF_0359

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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417,603 - DvMF_0357 0.53 -1.0
417,603 - DvMF_0357 0.53 -0.5
417,760 + DvMF_0357 0.71 -1.0
417,766 + DvMF_0357 0.71 -1.0
417,844 + DvMF_0357 0.80 +0.9
417,869 - DvMF_0357 0.83 -1.1
417,914 - DvMF_0357 0.88 -0.4
417,914 - DvMF_0357 0.88 -1.6
418,125 - -0.3
418,125 - -0.7
418,125 - +0.1
418,239 + -0.0
418,274 + -0.7
418,358 + -0.7
418,415 + -1.1
418,492 - -0.1
418,507 + -0.6
418,541 + -0.2
418,818 + DvMF_0358 0.16 -1.0
418,908 + DvMF_0358 0.19 -1.2
418,925 + DvMF_0358 0.19 -1.2
419,100 - DvMF_0358 0.25 -1.0
419,102 + DvMF_0358 0.25 -1.6
419,102 + DvMF_0358 0.25 -1.7
419,126 - DvMF_0358 0.26 -0.7
419,290 + DvMF_0358 0.31 -1.2
419,433 + DvMF_0358 0.35 -0.9
419,504 - DvMF_0358 0.37 -0.8
419,615 + DvMF_0358 0.41 -1.7
420,215 + DvMF_0358 0.59 -1.2
420,223 - DvMF_0358 0.60 -1.6
420,336 + DvMF_0358 0.63 -1.0
420,430 + DvMF_0358 0.66 -0.7
420,647 - DvMF_0358 0.73 -1.6
420,704 - DvMF_0358 0.74 -1.7
420,751 - DvMF_0358 0.76 -0.9
420,772 + DvMF_0358 0.76 -0.7
420,791 - DvMF_0358 0.77 -0.7
420,808 - DvMF_0358 0.78 -0.7
420,923 - DvMF_0358 0.81 -0.5
420,961 + DvMF_0358 0.82 -0.1
421,223 - -0.8
421,223 - +0.4
421,252 - -0.3
421,352 + -0.5
421,436 - -1.2
421,472 - -1.4
421,582 - -0.2
421,591 + -0.8
421,632 + -2.2
421,706 - DvMF_0359 0.15 -1.4
421,809 - DvMF_0359 0.27 -1.5
421,939 - DvMF_0359 0.42 -1.0
422,016 + DvMF_0359 0.50 -2.1
422,096 + DvMF_0359 0.60 -1.2
422,099 - DvMF_0359 0.60 +0.1
422,101 + DvMF_0359 0.60 -1.8
422,336 + DvMF_0359 0.87 -1.1

Or see this region's nucleotide sequence