Strain Fitness in Shewanella amazonensis SB2B around Sama_2608

Experiment: LB rep2 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep2 t1
3,121,958	+		Sama_2607	0.48	-0.7
3,121,959	-		Sama_2607	0.48	+1.1
3,121,959	-		Sama_2607	0.48	-0.5
3,122,186	+		Sama_2607	0.62	+0.2
3,122,186	+		Sama_2607	0.62	+1.4
3,122,186	+		Sama_2607	0.62	-1.2
3,122,186	+		Sama_2607	0.62	-0.6
3,122,186	+		Sama_2607	0.62	-0.7
3,122,186	+		Sama_2607	0.62	-0.6
3,122,186	+		Sama_2607	0.62	+0.1
3,122,186	+		Sama_2607	0.62	+1.4
3,122,186	+		Sama_2607	0.62	+0.1
3,122,186	+		Sama_2607	0.62	-0.8
3,122,186	+		Sama_2607	0.62	+0.2
3,122,187	-		Sama_2607	0.62	+0.0
3,122,187	-		Sama_2607	0.62	+0.4
3,122,187	-		Sama_2607	0.62	+1.4
3,122,189	+		Sama_2607	0.63	-0.2
3,122,189	+		Sama_2607	0.63	-1.2
3,122,190	-		Sama_2607	0.63	-0.2
3,122,190	-		Sama_2607	0.63	+1.1
3,122,190	-		Sama_2607	0.63	-0.7
3,122,190	-		Sama_2607	0.63	+0.4
3,122,253	-		Sama_2607	0.67	-0.5
3,122,300	+		Sama_2607	0.69	-0.2
3,122,300	+		Sama_2607	0.69	-1.8
3,122,300	+		Sama_2607	0.69	+1.1
3,122,301	-		Sama_2607	0.69	+0.1
3,122,301	-		Sama_2607	0.69	+0.4
3,122,301	-		Sama_2607	0.69	+1.6
3,122,301	-		Sama_2607	0.69	-0.4
3,122,301	-		Sama_2607	0.69	-0.5
3,122,304	+		Sama_2607	0.70	-0.5
3,122,304	+		Sama_2607	0.70	+1.4
3,122,304	+		Sama_2607	0.70	-0.1
3,122,305	-		Sama_2607	0.70	+1.4
3,122,305	-		Sama_2607	0.70	-1.0
3,122,305	-		Sama_2607	0.70	-0.1
3,122,427	+		Sama_2607	0.77	+1.0
3,122,428	-		Sama_2607	0.77	-0.6
3,122,458	-		Sama_2607	0.79	+1.4
3,122,458	-		Sama_2607	0.79	+1.5
3,122,496	+		Sama_2607	0.81	-1.2
3,122,497	-		Sama_2607	0.82	+1.1
3,122,514	+		Sama_2607	0.83	+0.0
3,122,514	+		Sama_2607	0.83	-0.2
3,122,514	+		Sama_2607	0.83	-0.2
3,122,515	-		Sama_2607	0.83	-0.5
3,122,515	-		Sama_2607	0.83	+0.3
3,122,526	-		Sama_2607	0.83	+0.2
3,122,576	+		Sama_2607	0.86	-0.4
3,122,576	+		Sama_2607	0.86	+0.2
3,122,576	+		Sama_2607	0.86	-1.2
3,122,576	+		Sama_2607	0.86	+0.5
3,122,577	-		Sama_2607	0.86	+0.4
3,122,577	-		Sama_2607	0.86	+0.2
3,122,577	-		Sama_2607	0.86	-0.2
3,122,577	-		Sama_2607	0.86	+0.4
3,122,577	-		Sama_2607	0.86	-0.7
3,122,593	-		Sama_2607	0.87	+1.1
3,122,595	+		Sama_2607	0.88	-0.2
3,122,595	+		Sama_2607	0.88	+0.8
3,122,595	+		Sama_2607	0.88	+0.6
3,122,596	-		Sama_2607	0.88	-0.8
3,122,596	-		Sama_2607	0.88	-0.2
3,122,596	-		Sama_2607	0.88	+0.5
3,122,596	-		Sama_2607	0.88	-1.2
3,122,596	-		Sama_2607	0.88	-0.4
3,122,598	+		Sama_2607	0.88	+0.4
3,122,599	-		Sama_2607	0.88	-1.5
3,122,606	+		Sama_2607	0.88	-1.2
3,122,606	+		Sama_2607	0.88	+0.6
3,122,607	-		Sama_2607	0.88	-0.8
3,122,607	-		Sama_2607	0.88	-0.2
3,122,611	-		Sama_2607	0.89	+0.1
3,122,618	+		Sama_2607	0.89	-0.7
3,122,618	+		Sama_2607	0.89	-1.4
3,122,618	+		Sama_2607	0.89	+0.6
3,122,619	-		Sama_2607	0.89	-0.2
3,122,619	-		Sama_2607	0.89	-0.2
3,122,619	-		Sama_2607	0.89	+1.0
3,122,690	+				+0.4
3,122,690	+				+1.0
3,122,691	-				-0.0
3,122,691	-				+2.1
3,122,787	+				+0.7
3,122,788	-				+0.1
3,122,788	-				-1.1
3,122,809	-				+1.4
3,122,809	-				+1.2
3,122,809	-				+0.8
3,122,816	+				-1.0
3,122,843	+				+0.6
3,122,844	-				+0.5
3,122,875	+				+0.8
3,122,876	-				+0.0
3,122,876	-				+0.9
3,122,884	+				+0.5
3,122,884	+				+0.7
3,122,884	+				-1.1
3,122,885	-				+1.2
3,122,885	-				-0.2
3,122,885	-				+1.9
3,122,885	-				+2.0
3,122,885	-				+1.8
3,122,885	-				+0.2
3,122,885	-				+0.4
3,122,913	+				+1.0
3,122,932	-				+0.4
3,123,004	+				+0.2
3,123,004	+				+1.0
3,123,005	-				+0.1
3,123,005	-				-0.0
3,123,032	+				+2.1
3,123,032	+				-1.0
3,123,032	+				+1.4
3,123,032	+				+0.0
3,123,048	-				+1.0
3,123,048	-				-0.8
3,123,067	+				+1.8
3,123,067	+				-0.2
3,123,068	-				+0.0
3,123,068	-				+2.4
3,123,068	-				+0.8
3,123,068	-				-0.2
3,123,098	+		Sama_2608	0.11	+0.5
3,123,098	+		Sama_2608	0.11	+0.2
3,123,099	-		Sama_2608	0.11	-0.2
3,123,099	-		Sama_2608	0.11	-0.5
3,123,099	-		Sama_2608	0.11	+0.8
3,123,099	-		Sama_2608	0.11	-1.6
3,123,101	+		Sama_2608	0.11	+0.9
3,123,101	+		Sama_2608	0.11	-0.2
3,123,101	+		Sama_2608	0.11	+0.2
3,123,101	+		Sama_2608	0.11	+0.1
3,123,102	-		Sama_2608	0.11	-0.2
3,123,102	-		Sama_2608	0.11	+1.0
3,123,102	-		Sama_2608	0.11	-0.2
3,123,302	+		Sama_2608	0.24	-1.0
3,123,314	+		Sama_2608	0.25	+1.4
3,123,314	+		Sama_2608	0.25	-0.2
3,123,314	+		Sama_2608	0.25	+1.2
3,123,315	-		Sama_2608	0.25	-0.6
3,123,315	-		Sama_2608	0.25	-0.8
3,123,327	-		Sama_2608	0.26	-0.2
3,123,332	+		Sama_2608	0.26	+0.0
3,123,332	+		Sama_2608	0.26	+0.8
3,123,332	+		Sama_2608	0.26	-0.5
3,123,332	+		Sama_2608	0.26	+0.3
3,123,332	+		Sama_2608	0.26	-0.6
3,123,333	-		Sama_2608	0.26	+2.1
3,123,333	-		Sama_2608	0.26	-1.5
3,123,333	-		Sama_2608	0.26	+1.4
3,123,333	-		Sama_2608	0.26	+0.5
3,123,333	-		Sama_2608	0.26	-0.2
3,123,333	-		Sama_2608	0.26	+0.6
3,123,333	-		Sama_2608	0.26	-0.2
3,123,334	+		Sama_2608	0.26	+0.3
3,123,334	+		Sama_2608	0.26	-0.2
3,123,335	-		Sama_2608	0.26	-0.8
3,123,335	-		Sama_2608	0.26	+0.4
3,123,335	-		Sama_2608	0.26	+0.8
3,123,335	-		Sama_2608	0.26	-0.4
3,123,383	+		Sama_2608	0.29	+0.4
3,123,484	+		Sama_2608	0.35	-0.6
3,123,485	-		Sama_2608	0.36	-1.2
3,123,485	-		Sama_2608	0.36	-0.0
3,123,521	+		Sama_2608	0.38	+1.8
3,123,522	-		Sama_2608	0.38	+0.9
3,123,522	-		Sama_2608	0.38	+0.5
3,123,554	+		Sama_2608	0.40	-0.8
3,123,620	+		Sama_2608	0.44	+0.9
3,123,620	+		Sama_2608	0.44	+0.1
3,123,621	-		Sama_2608	0.44	+0.4
3,123,639	+		Sama_2608	0.45	-0.1
3,123,639	+		Sama_2608	0.45	+0.1
3,123,639	+		Sama_2608	0.45	-0.6
3,123,640	-		Sama_2608	0.45	+0.8
3,123,640	-		Sama_2608	0.45	-1.0
3,123,640	-		Sama_2608	0.45	-1.0
3,123,672	+		Sama_2608	0.47	+2.8
3,123,672	+		Sama_2608	0.47	+0.0
3,123,672	+		Sama_2608	0.47	-0.2
3,123,719	+		Sama_2608	0.50	-0.4
3,123,719	+		Sama_2608	0.50	+0.4
3,123,719	+		Sama_2608	0.50	-2.1
3,123,720	-		Sama_2608	0.50	+1.5
3,123,780	+		Sama_2608	0.54	+0.8
3,123,780	+		Sama_2608	0.54	+0.7
3,123,780	+		Sama_2608	0.54	+0.8
3,123,780	+		Sama_2608	0.54	-0.2
3,123,849	+		Sama_2608	0.59	-1.5
3,123,850	-		Sama_2608	0.59	-0.9
3,123,873	-		Sama_2608	0.60	-0.2
3,123,873	-		Sama_2608	0.60	-0.9
3,123,904	-		Sama_2608	0.62	+0.5
3,123,918	-		Sama_2608	0.63	-0.4
3,123,918	-		Sama_2608	0.63	+1.7
3,123,935	+		Sama_2608	0.64	+0.3
3,123,935	+		Sama_2608	0.64	+0.2
3,123,936	-		Sama_2608	0.64	-0.5
3,123,953	+		Sama_2608	0.65	-0.6
3,123,953	+		Sama_2608	0.65	+0.1
3,123,954	-		Sama_2608	0.65	+0.8
3,123,954	-		Sama_2608	0.65	-0.5
3,123,971	+		Sama_2608	0.66	+0.4
3,123,972	-		Sama_2608	0.66	-0.5
3,123,972	-		Sama_2608	0.66	+0.5
3,123,993	+		Sama_2608	0.68	-1.4
3,123,993	+		Sama_2608	0.68	-0.2
3,123,993	+		Sama_2608	0.68	+0.7
3,123,993	+		Sama_2608	0.68	+0.3
3,123,994	-		Sama_2608	0.68	-0.8
3,123,994	-		Sama_2608	0.68	+0.4
3,124,025	+		Sama_2608	0.70	+0.8
3,124,067	+		Sama_2608	0.73	+1.2
3,124,068	-		Sama_2608	0.73	-0.2
3,124,068	-		Sama_2608	0.73	-0.0
3,124,068	-		Sama_2608	0.73	-0.2
3,124,068	-		Sama_2608	0.73	-0.2
3,124,092	+		Sama_2608	0.74	-2.2
3,124,092	+		Sama_2608	0.74	-0.2
3,124,092	+		Sama_2608	0.74	+0.6
3,124,092	+		Sama_2608	0.74	+0.0
3,124,156	+		Sama_2608	0.78	+0.3
3,124,156	+		Sama_2608	0.78	+0.8
3,124,157	-		Sama_2608	0.78	-0.1
3,124,164	+		Sama_2608	0.79	-0.2
3,124,173	-		Sama_2608	0.79	-0.8
3,124,182	-		Sama_2608	0.80	-0.8
3,124,232	-		Sama_2608	0.83	+0.2
3,124,232	-		Sama_2608	0.83	+0.2
3,124,247	+		Sama_2608	0.84	+0.8
3,124,248	-		Sama_2608	0.84	-0.4
3,124,271	+		Sama_2608	0.85	+1.0
3,124,271	+		Sama_2608	0.85	+0.4
3,124,272	-		Sama_2608	0.86	-0.2
3,124,300	+		Sama_2608	0.87	+0.3
3,124,300	+		Sama_2608	0.87	+0.8
3,124,300	+		Sama_2608	0.87	+0.6
3,124,300	+		Sama_2608	0.87	+0.9
3,124,301	-		Sama_2608	0.87	+1.1
3,124,301	-		Sama_2608	0.87	-0.2
3,124,353	-				+0.3
3,124,353	-				-0.5
3,124,362	+				-0.4
3,124,363	-				+0.8
3,124,457	+				+1.4
3,124,457	+				-0.0
3,124,457	+				-0.2
3,124,458	-				-0.4
3,124,458	-				+0.4
3,124,467	-				-0.2
3,124,467	-				-0.0
3,124,467	-				-1.2
3,124,478	+				-0.8
3,124,478	+				-0.2
3,124,478	+				-1.8
3,124,478	+				+1.1
3,124,479	-				+1.4
3,124,499	+				-0.4
3,124,505	+				+1.8
3,124,506	-				-0.2
3,124,506	-				+1.4
3,124,527	+				+0.4
3,124,527	+				+0.7
3,124,528	-				+0.8
3,124,528	-				-0.5
3,124,533	+				+1.1
3,124,637	+				-1.2
3,124,638	-				+0.9
3,124,734	+				+0.4
3,124,780	+				+1.8
3,124,823	-		Sama_2609	0.12	+0.2
3,124,823	-		Sama_2609	0.12	-0.2
3,124,839	+		Sama_2609	0.13	+0.8
3,124,840	-		Sama_2609	0.13	+1.4
3,124,939	-		Sama_2609	0.18	-1.2
3,125,068	+		Sama_2609	0.25	-0.8
3,125,088	+		Sama_2609	0.26	+0.1
3,125,116	+		Sama_2609	0.28	+1.0
3,125,117	-		Sama_2609	0.28	+1.0
3,125,117	-		Sama_2609	0.28	-0.2
3,125,117	-		Sama_2609	0.28	-1.5
3,125,167	-		Sama_2609	0.30	-1.0
3,125,225	-		Sama_2609	0.33	+0.4
3,125,244	+		Sama_2609	0.35	-0.8
3,125,245	-		Sama_2609	0.35	+0.4
3,125,245	-		Sama_2609	0.35	-0.9
3,125,245	-		Sama_2609	0.35	+0.9
3,125,245	-		Sama_2609	0.35	+0.1
3,125,245	-		Sama_2609	0.35	+0.4
3,125,245	-		Sama_2609	0.35	-0.6
3,125,322	+		Sama_2609	0.39	-0.8
3,125,323	-		Sama_2609	0.39	+0.8
3,125,323	-		Sama_2609	0.39	-0.2
3,125,326	+		Sama_2609	0.39	-0.2
3,125,326	+		Sama_2609	0.39	+0.3
3,125,326	+		Sama_2609	0.39	+1.1
3,125,326	+		Sama_2609	0.39	-0.2
3,125,327	-		Sama_2609	0.39	-0.2
3,125,327	-		Sama_2609	0.39	-0.2
3,125,327	-		Sama_2609	0.39	+1.1
3,125,327	-		Sama_2609	0.39	-0.2
3,125,327	-		Sama_2609	0.39	+0.7
3,125,352	+		Sama_2609	0.40	+0.8
3,125,352	+		Sama_2609	0.40	+0.8
3,125,352	+		Sama_2609	0.40	-0.1
3,125,352	+		Sama_2609	0.40	+0.6
3,125,353	-		Sama_2609	0.40	-0.8
3,125,353	-		Sama_2609	0.40	-0.5
3,125,353	-		Sama_2609	0.40	+0.8
3,125,353	-		Sama_2609	0.40	-0.2
3,125,353	-		Sama_2609	0.40	+1.0
3,125,353	-		Sama_2609	0.40	-0.2
3,125,353	-		Sama_2609	0.40	-1.0
3,125,432	-		Sama_2609	0.45	-1.0
3,125,442	+		Sama_2609	0.45	+0.5