Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3514 and Shew_3515 overlap by 8 nucleotides Shew_3515 and Shew_3516 overlap by 1 nucleotides Shew_3516 and Shew_3517 are separated by 0 nucleotides
Shew_3514: Shew_3514 - hypothetical protein (RefSeq), at 4,199,705 to 4,201,066
_3514
Shew_3515: Shew_3515 - Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq), at 4,201,059 to 4,201,430
_3515
Shew_3516: Shew_3516 - glycosyl transferase family protein (RefSeq), at 4,201,430 to 4,203,148
_3516
Shew_3517: Shew_3517 - histidine ammonia-lyase (RefSeq), at 4,203,149 to 4,204,711
_3517
Position (kb) 4201
4202
4203
4204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4200.841 kb on + strand, within Shew_3514 at 4200.841 kb on + strand, within Shew_3514 at 4200.849 kb on - strand, within Shew_3514 at 4201.145 kb on + strand, within Shew_3515 at 4201.258 kb on + strand, within Shew_3515 at 4201.266 kb on - strand, within Shew_3515 at 4201.266 kb on - strand, within Shew_3515 at 4201.266 kb on - strand, within Shew_3515 at 4201.266 kb on - strand, within Shew_3515 at 4201.366 kb on - strand, within Shew_3515 at 4201.618 kb on - strand, within Shew_3516 at 4201.750 kb on + strand, within Shew_3516 at 4201.849 kb on + strand, within Shew_3516 at 4201.865 kb on - strand, within Shew_3516 at 4202.179 kb on - strand, within Shew_3516 at 4202.235 kb on + strand, within Shew_3516 at 4202.235 kb on + strand, within Shew_3516 at 4202.243 kb on - strand, within Shew_3516 at 4202.243 kb on - strand, within Shew_3516 at 4202.406 kb on + strand, within Shew_3516 at 4202.507 kb on + strand, within Shew_3516 at 4202.577 kb on - strand, within Shew_3516 at 4202.671 kb on + strand, within Shew_3516 at 4202.677 kb on + strand, within Shew_3516 at 4202.695 kb on - strand, within Shew_3516 at 4202.727 kb on + strand, within Shew_3516 at 4202.735 kb on - strand, within Shew_3516 at 4202.735 kb on - strand, within Shew_3516 at 4202.766 kb on - strand, within Shew_3516 at 4203.071 kb on - strand at 4203.469 kb on + strand, within Shew_3517 at 4203.469 kb on + strand, within Shew_3517 at 4203.511 kb on + strand, within Shew_3517 at 4203.688 kb on - strand, within Shew_3517 at 4203.696 kb on + strand, within Shew_3517 at 4203.806 kb on - strand, within Shew_3517 at 4203.806 kb on - strand, within Shew_3517
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 4,200,841 + Shew_3514 0.83 -0.3 4,200,841 + Shew_3514 0.83 +1.4 4,200,849 - Shew_3514 0.84 +1.7 4,201,145 + Shew_3515 0.23 -0.2 4,201,258 + Shew_3515 0.53 -3.6 4,201,266 - Shew_3515 0.56 +0.3 4,201,266 - Shew_3515 0.56 -1.3 4,201,266 - Shew_3515 0.56 +0.2 4,201,266 - Shew_3515 0.56 -2.0 4,201,366 - Shew_3515 0.83 +0.6 4,201,618 - Shew_3516 0.11 +1.4 4,201,750 + Shew_3516 0.19 +0.5 4,201,849 + Shew_3516 0.24 -2.6 4,201,865 - Shew_3516 0.25 +0.8 4,202,179 - Shew_3516 0.44 +3.1 4,202,235 + Shew_3516 0.47 -0.2 4,202,235 + Shew_3516 0.47 -1.3 4,202,243 - Shew_3516 0.47 -3.4 4,202,243 - Shew_3516 0.47 +1.0 4,202,406 + Shew_3516 0.57 -0.3 4,202,507 + Shew_3516 0.63 -0.4 4,202,577 - Shew_3516 0.67 +0.3 4,202,671 + Shew_3516 0.72 +0.1 4,202,677 + Shew_3516 0.73 +0.2 4,202,695 - Shew_3516 0.74 +0.4 4,202,727 + Shew_3516 0.75 -0.6 4,202,735 - Shew_3516 0.76 -0.4 4,202,735 - Shew_3516 0.76 +2.0 4,202,766 - Shew_3516 0.78 -0.4 4,203,071 - +1.9 4,203,469 + Shew_3517 0.20 +0.4 4,203,469 + Shew_3517 0.20 -0.1 4,203,511 + Shew_3517 0.23 -0.2 4,203,688 - Shew_3517 0.34 +0.9 4,203,696 + Shew_3517 0.35 +0.4 4,203,806 - Shew_3517 0.42 -0.7 4,203,806 - Shew_3517 0.42 +0.5
Or see this region's nucleotide sequence